TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_dre selenoprotein [Danio rerio]
         (138 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376618.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    31   0.30 
gb|GL376622.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    29   1.5  
gb|GL376637.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    28   2.6  
gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   7.5  
gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   9.8  
gb|GL376628.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   9.8  

>gb|GL376618.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582021,
             whole genome shotgun sequence
          Length = 118487

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 6     VALLALCATGRTAENLSESTTDQD-KLVIARGKLVAPSVVGUSIKKMPELY 55
             +AL+ L        N  E+TT+ D K VI    LVA +++   IKK PE Y
Sbjct: 19290 IALVLLLTLATQVYNQKEATTNGDLKYVINTVALVAMALLAYVIKKYPEFY 19138


>gb|GL376622.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582025,
             whole genome shotgun sequence
          Length = 692778

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +1

Query: 57    FLMERWALYHNLEYDSGEDKNPRLIFYNDKDEEVKVVPVKKMKADEISSLLDSLGFYKRS 116
             F   R A   ++  ++G + NP   +    +    +VPV ++ A  I  LL  LGF  R 
Sbjct: 42385 FCCSRKARCQHVSQEAGFECNPNE-WKLSPEPPTNIVPVVRVDAKRIDLLLRFLGFTLRQ 42561

Query: 117   EKGEEVPE 124
                 E PE
Sbjct: 42562 VSDREAPE 42585


>gb|GL376637.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582040,
              whole genome shotgun sequence
          Length = 493084

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 73     GEDKNPRLIFYNDKDEEVKVVPVKKMKADEISSLLDSLGFYKRSEKG 119
              G D N  L+FYN   + + ++P+K      I    + + FY   EKG
Sbjct: 334223 GSDANYNLLFYNSTKQHLCLIPIKFTTFKPILQPKNYINFY--DEKG 334089


>gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581402,
              whole genome shotgun sequence
          Length = 979788

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 51     MPELYNFL--MERWALYHNLEYDSGEDKNPRLIF 82
              +P+L NF   ++ W L   L   S +D NP L+F
Sbjct: 380875 LPQLCNFAESLQPWVLIRALLQRSSQDINPSLVF 380774


>gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582041,
              whole genome shotgun sequence
          Length = 1261388

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 69     EYDSGEDKNPRLIFYNDKDEEVKVVPVKKMKADEISSLLDSLGF 112
              E DS +D+  R    N K +   V   KK +  + + LLD LGF
Sbjct: 292026 EEDSEDDRRRRGRHSNRKGKAASVSLQKKRQPKQQADLLDPLGF 291895


>gb|GL376628.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582031,
               whole genome shotgun sequence
          Length = 1316296

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 7       ALLALCATGRTAENLSESTTDQDKLV 32
               AL ALCA    AE  ++ T D+ KLV
Sbjct: 1241299 ALSALCA*VNAAEGTTDCTVDESKLV 1241222


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,134,952
Number of Sequences: 82
Number of extensions: 63292
Number of successful extensions: 297
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 41
length of query: 138
length of database: 14,267,206
effective HSP length: 91
effective length of query: 47
effective length of database: 14,259,744
effective search space: 670207968
effective search space used: 670207968
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)