TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_dre selenoprotein [Danio rerio]
         (138 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    35   0.010
gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   4.4  
gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    25   9.9  
gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    25   9.9  

>gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome
            shotgun sequence
          Length = 1007773

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
 Frame = +3

Query: 45   GUSIKKMPELYNFLME---RWALYHNLEYDSGEDKNPRLIFYNDKDEEVKVVP--VKKMK 99
            G  + +MPEL +FL +    W +  N+ Y +G  +   +  YN+   +V+V+   V K++
Sbjct: 7548 G*MLNRMPELKSFLKDGEAEWYVGVNVTYVTG--RRAVMHIYNEGGSKVEVIDLTVSKLQ 7721

Query: 100  ADE-ISSLLDSLGFYKRSEKGEEVPEE 125
              + + +L+    F KRSE+  E+P E
Sbjct: 7722 TKKALHALMAEEEFVKRSEEAVEMPHE 7802


>gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 4, whole genome shotgun
              sequence
          Length = 1360148

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 62     WALYHN-LEYDSGEDKNPRLIFYNDKDEEVKVVPVKKMKADEISSLLD-SLGFYKRSE 117
              WA +HN  E         +L+   DK+    V   +K   DE++++L+ +LG  K+S+
Sbjct: 864292 WAAFHNSAEGARALTSETQLLKVQDKEGNTPVETARKEGNDEVANILEAALGENKKSK 864465


>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
              sequence
          Length = 683011

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 78     PRLIFYNDKDEEVKVVPVKKMKADEISSLLDSLGFYKRSEKGE-EVPEEFKHFPLRAPRD 136
              P+LIF ND+D  V+V   +    D ++S +  +      +KG+   P    H   R PR 
Sbjct: 231964 PKLIFGNDEDSVVRVSGTQYTGFDRLTSKI--IDIASGRDKGQWRYPIFHGHVGARIPRM 231791

Query: 137    EL 138
               L
Sbjct: 231790 RL 231785


>gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun
              sequence
          Length = 1035082

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 22     SESTTDQDKLVIARGKLVAPSVVGUSIKKMPELYNFLMERWALYHNLEYDSGEDKN 77
              S S+   D L +A G L   + +  S+  + E+Y+F    W L   ++ D  +D+N
Sbjct: 108070 SSSSISDDGLTVAIG-LPGATTLFSSVGSV-EVYSFDGSAWNLIRTIDGDESDDRN 108231


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,422,228
Number of Sequences: 31
Number of extensions: 38045
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 28
length of query: 138
length of database: 7,911,228
effective HSP length: 88
effective length of query: 50
effective length of database: 7,908,500
effective search space: 395425000
effective search space used: 395425000
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)