TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fep15_dre selenoprotein [Danio rerio] (138 letters) Database: P.pallidum/genome.fa 42 sequences; 32,942,533 total letters Searching..........................................done Score E Sequences producing significant alignments: (bits) Value gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 0.53 gb|GL291010.1| Polysphondylium pallidum PN500 unplaced genomic s... 29 1.2 gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic s... 28 2.0 gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 4.5 gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic s... 27 5.9 gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic s... 26 7.7 gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s... 26 7.7 >gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold4, whole genome shotgun sequence Length = 1229170 Score = 30.0 bits (66), Expect = 0.53 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +1 Query: 72 SGEDKNPRLIFYNDKDEEVKVVPVKKMKADEI 103 S +DKN NDKDEE+ V P+ KM D+I Sbjct: 196636 SDKDKN------NDKDEELSVDPLDKMSNDQI 196713 Score = 26.9 bits (58), Expect = 4.5 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 55 YNFLMERWALYHNLEYDSGEDKNPRLIFYNDKDE 88 YN + R L + L+Y S + L+FYND+DE Sbjct: 43424 YNQPITRGTLPNTLKYLSLSSYSGDLLFYNDEDE 43323 >gb|GL291010.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig13, whole genome shotgun sequence Length = 836226 Score = 28.9 bits (63), Expect = 1.2 Identities = 14/46 (30%), Positives = 30/46 (65%) Frame = +2 Query: 14 TGRTAENLSESTTDQDKLVIARGKLVAPSVVGUSIKKMPELYNFLM 59 T ++ + L+E++ +++L+I K A SV+ K +P+LY+F++ Sbjct: 23147 TVQSNQLLAEASLKRNELIIVIEKSPAASVIKAIEKYLPDLYSFIL 23284 >gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig1, whole genome shotgun sequence Length = 1301413 Score = 28.1 bits (61), Expect = 2.0 Identities = 17/67 (25%), Positives = 34/67 (50%) Frame = +1 Query: 51 MPELYNFLMERWALYHNLEYDSGEDKNPRLIFYNDKDEEVKVVPVKKMKADEISSLLDSL 110 +PELYN + L +S D P ++ ++KD+ + + VK++ ++ + +L Sbjct: 15781 IPELYNHNLLVMIQNKQLGSNSVYDYFPTEVYNSEKDKVLSIHTVKRLCKSKLFRDIKTL 15960 Query: 111 GFYKRSE 117 +Y SE Sbjct: 15961 EYYHLSE 15981 >gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold6, whole genome shotgun sequence Length = 2018088 Score = 26.9 bits (58), Expect = 4.5 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -2 Query: 54 LYNFLMERWALYHNLEYDSGE-DKNPRLIFYNDK 86 LYN+ + RW + + YD E D R+IF + K Sbjct: 359213 LYNYFLHRWCVDWTINYDYNETD*IERMIFDSSK 359112 >gb|GL291006.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig9, whole genome shotgun sequence Length = 1029409 Score = 26.6 bits (57), Expect = 5.9 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 94 PVKKMKADEISSLLDSLGFYKRSEKGEEVPEE 125 P+ K DE+ SLL Y EK ++P E Sbjct: 108785 PIFKSTVDELDSLLKEYSGYSLIEKMNQIPNE 108690 Score = 26.6 bits (57), Expect = 5.9 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -1 Query: 94 PVKKMKADEISSLLDSLGFYKRSEKGEEVPEE 125 P+ K DE+ SLL Y EK ++P E Sbjct: 95482 PIFKSTVDELDSLLKEYSGYSLIEKMNQIPNE 95387 >gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold11, whole genome shotgun sequence Length = 1505626 Score = 26.2 bits (56), Expect = 7.7 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 83 YNDKDEEVKVVPVKKMKADEISSLLDSLGFY 113 YN+ EE+ VV K++ +D + S L L Y Sbjct: 154420 YNEDGEEIDVVLEKQLNSDILPSSLQKLTLY 154512 >gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3, whole genome shotgun sequence Length = 2290287 Score = 26.2 bits (56), Expect = 7.7 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +2 Query: 82 FYNDKDEEVKVVPVKKMKADEISSLLDS 109 +Y+D+ E K + K++ + +S+LLDS Sbjct: 1719665 YYSDQIEHFKTIVTKEIGCNHLSALLDS 1719748 Database: P.pallidum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 32,942,533 Number of sequences in database: 42 Lambda K H 0.316 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,619,053 Number of Sequences: 42 Number of extensions: 56901 Number of successful extensions: 204 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 180 Number of HSP's gapped (non-prelim): 46 length of query: 138 length of database: 10,980,844 effective HSP length: 90 effective length of query: 48 effective length of database: 10,977,064 effective search space: 526899072 effective search space used: 526899072 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)