TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_dre selenoprotein [Danio rerio]
         (138 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000255.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   4.9  
gb|ABWE01001995.1| Hyaloperonospora parasitica strain Emoy2 v-7....    27   6.3  

>gb|ABWE01000255.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont35.18, whole
             genome shotgun sequence
          Length = 56234

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 17    TAENLSESTTDQDKLVIARGKLVAPSVVGUSIKKMPE-LYNFLMERW 62
             T    SES +D+ K ++A   LV    V  SIK++ E +  FL  RW
Sbjct: 37230 TRRKSSESGSDEHKSIVAIALLVTSRHVLSSIKRLVEHIVWFLFMRW 37370


>gb|ABWE01001995.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont179.4, whole
           genome shotgun sequence
          Length = 6745

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 48  IKKMPELYNFLMERWALYHNLEYDSGEDKNP 78
           I  MP  ++FL+   A+YH+L   S +D+ P
Sbjct: 505 IPAMPPSWHFLLSGVAIYHSL*GGSAKDRRP 413


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,416,041
Number of Sequences: 5422
Number of extensions: 99530
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 240
length of query: 138
length of database: 22,486,378
effective HSP length: 94
effective length of query: 44
effective length of database: 21,976,710
effective search space: 966975240
effective search space used: 966975240
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)