TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_dre selenoprotein [Danio rerio]
         (138 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   1.9  
emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   2.4  
emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genom...    28   7.1  
emb|FN649747.1| Ectocarpus siliculosus strain Ec 32, whole genom...    28   9.3  

>emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG31
          Length = 577967

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 62     WALYHNLEYDSGEDKNPRLIFYNDKDEEVKVVPVKK 97
              WAL   +E D   D +P L     K E +  VPVK+
Sbjct: 356285 WALSERVEIDCARDSDPDLRRPRQKHERIPTVPVKR 356392


>emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG02
          Length = 9289656

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +2

Query: 9       LALCATGRTAENLSESTTDQDKLVIARGKLVAPSVVGUSIKKMPELYNFLMERWALYHNL 68
               L LC++   AE++ E++   DKL  A  ++++  VVG      P  +N L      YH  
Sbjct: 6352283 LPLCSSSAFAEDV-ETSPPPDKLACATSRVISCGVVGRHAHAAPHTWNLLT---VSYHY* 6352450

Query: 69      EYDSGEDKNPRL 80
                Y    +   RL
Sbjct: 6352451 NYPFAGNNMQRL 6352486


>emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG04
          Length = 5529539

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = -2

Query: 86      KDEE-----VKVVPVKKMKADEISSLLDSLGFYKRSEKGEEVPEEFKHFP 130
               KDEE     V V+  +K K    S L+ +   Y  +  G  +PE+ +H P
Sbjct: 3872365 KDEETAPPGVSVICTRKKKKTSRSPLVPTPNKYSVTPAGHTIPEQIEHLP 3872216


>emb|FN649747.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
              assembly, chromosome LG22
          Length = 2337862

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 97     KMKADEISSLLDSLGFYKRSEKGEEVPEE 125
              K++ D IS  LDS+GF      GE+VP +
Sbjct: 101223 KLRVDGISKYLDSVGFRFDHAFGEDVPNQ 101137


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,769,732
Number of Sequences: 35
Number of extensions: 286297
Number of successful extensions: 1144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1124
Number of HSP's gapped (non-prelim): 75
length of query: 138
length of database: 65,311,373
effective HSP length: 101
effective length of query: 37
effective length of database: 65,307,838
effective search space: 2416390006
effective search space used: 2416390006
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)