TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_dre selenoprotein [Danio rerio]
         (138 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    28   0.50 
gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol...    27   1.9  
gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol...    26   2.5  
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    25   4.2  
gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    25   4.2  
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    24   9.4  

>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun
              sequence
          Length = 1344712

 Score = 28.5 bits (62), Expect = 0.50
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -3

Query: 55     YNFLMERWALYHNLEYDSGEDKNPRLIFYNDKDEEVKVVPVKKMK 99
              YN L+ + A Y  + +D+ + K+   I  +D+  E+ VVP K+++
Sbjct: 777266 YNLLVSKSAKYSTIYFDNLKLKSSDGIILDDESIEIIVVPSKELE 777132


>gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun
              sequence
          Length = 1080900

 Score = 26.6 bits (57), Expect = 1.9
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 57     FLMERWALYHNL-EYDSGEDKNPRLIFYNDKDEEVKVVPVKKMKADEISSLL 107
              F +ER  L  NL +  SGE  N R   Y+DK  E  ++ +   + D ++ LL
Sbjct: 957910 FAVERRLLDSNLIDLVSGEFVNTRSESYDDKRNESTILLILDRREDPVTPLL 958065



 Score = 25.8 bits (55), Expect = 3.2
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 28     QDKLVIARGKL--VAPSVVGUSIKKMPELYNFLMERWALYHNLEY 70
              QD+  I + KL    PS++   I    E+ N+L+     Y+N ++
Sbjct: 527632 QDEFPIGKNKLPLTQPSILSSLINSDIEILNYLLSLMVQYNNCQF 527766


>gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun
              sequence
          Length = 1278458

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
 Frame = -2

Query: 87     DEEVKVVPVKKMKAD---------EISSLLDSLGFYKRSEKGEEVPEEFKHF 129
              D++ K++ +KK++ +         E+SSLL+S+  ++R+    +  +  KHF
Sbjct: 121429 DKDQKMINLKKVETNKVENTKGHAELSSLLNSIKTFRRNNTQYKFDQIVKHF 121274


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 12/70 (17%), Positives = 33/70 (47%)
 Frame = -3

Query: 29     DKLVIARGKLVAPSVVGUSIKKMPELYNFLMERWALYHNLEYDSGEDKNPRLIFYNDKDE 88
              D ++  R  L+ P+ +G  I  +            L+   ++DSG +    +++++   +
Sbjct: 836209 DSIICNRSLLIIPNSLGSKISSLN-----------LFDRSKFDSGPNSGLSILYFDFFLQ 836063

Query: 89     EVKVVPVKKM 98
              +  ++P+ K+
Sbjct: 836062 KTPIIPLSKV 836033


>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 64     LYHNLEYDSGEDKNPRLIFYNDKDEEVKVVPVKKM 98
              LYH +      D+N R I  N+K+EE  +   K++
Sbjct: 687200 LYHIIMVKITNDENERTIILNNKNEESFIHSFKRL 687304


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
              sequence
          Length = 1332857

 Score = 24.3 bits (51), Expect = 9.4
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 80     LIFYNDKDEEVKVVP--VKKMKADEISSLLDSLGFYKRSEKGEEVPEEFKHF 129
              L+  ND  E  K +   +KK+K DEI S L  +    + ++ +++    + +
Sbjct: 661668 LVRLNDYKENQKSLELFIKKLKEDEIDSCLGEISAKSQLKESQKIVRSLEKY 661823


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,295,234
Number of Sequences: 8
Number of extensions: 16972
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 52
length of query: 138
length of database: 3,034,108
effective HSP length: 82
effective length of query: 56
effective length of database: 3,033,452
effective search space: 169873312
effective search space used: 169873312
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)