TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_dre selenoprotein [Danio rerio]
         (138 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.5 of Capsaspora owczarzaki ATCC 30864                    27   5.1  
supercontig_1.1 of Capsaspora owczarzaki ATCC 30864                    27   5.1  
supercontig_1.10 of Capsaspora owczarzaki ATCC 30864                   26   8.7  
supercontig_1.3 of Capsaspora owczarzaki ATCC 30864                    26   8.7  

>supercontig_1.5 of Capsaspora owczarzaki ATCC 30864
          Length = 1755934

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 1      MWLTLVALLALCATGRTAENLSESTTDQDK 30
              ++L L+A+  +C+T R +E LSE+   +D+
Sbjct: 109511 LFLLLLAVGCVCSTSRDSEYLSENEEQEDE 109600


>supercontig_1.1 of Capsaspora owczarzaki ATCC 30864
          Length = 3794667

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 9       LALCATGRTAENLSESTTDQDKLVIARGKLVA 40
               LALCATG  A   + +TT    L +   +LVA
Sbjct: 1810307 LALCATGLAANTTTATTTVDQVLPVPAEELVA 1810402


>supercontig_1.10 of Capsaspora owczarzaki ATCC 30864
          Length = 1357310

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 72     SGEDKNPRLIFYNDKDEEVKVVPVKKMKADEI 103
              SGED+N +LIF+       + +P +K KA  +
Sbjct: 260959 SGEDQNLQLIFFLGSCIGSRRIPARKQKAQGV 261054


>supercontig_1.3 of Capsaspora owczarzaki ATCC 30864
          Length = 2526540

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 32      VIARGKLVAPSVVGUSIKKMPELYNFLMERWALYHNLEYDS 72
               V+AR    +PSV      + PE YN   ++W  +H  E DS
Sbjct: 1923664 VLARRAAHSPSVG*EQSDRFPETYNASKQQWK-FHPSESDS 1923545


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,978,498
Number of Sequences: 89
Number of extensions: 40090
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 48
length of query: 138
length of database: 9,347,932
effective HSP length: 89
effective length of query: 49
effective length of database: 9,340,011
effective search space: 457660539
effective search space used: 457660539
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)