TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_dre selenoprotein [Danio rerio]
         (138 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl...    26   4.3  
dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp...    25   7.3  

>dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete
              sequence
          Length = 528682

 Score = 26.2 bits (56), Expect = 4.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 87     DEEVKVVPVKKMKADEISSLLDSLGFYKRSEKGE 120
              +E ++ VPV   +A ++ S+L++L  Y  + +GE
Sbjct: 434212 EEWLEAVPVTISRASQVESVLEALEGYVAARRGE 434111


>dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete
              sequence
          Length = 1232258

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 78     PRLIFYNDKDEEVKVVPVKKMKADEISSLLDSLGFYKRSEKGEEVP 123
              PR  F   +DE++ + P      DE+ S   + G  +RSE+    P
Sbjct: 896039 PRNSFAALQDEQMPLSPEPTSGTDEVDSEQPAAGIAERSERSSAHP 896176


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,317,088
Number of Sequences: 20
Number of extensions: 23135
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 5
length of query: 138
length of database: 5,515,582
effective HSP length: 85
effective length of query: 53
effective length of database: 5,513,882
effective search space: 292235746
effective search space used: 292235746
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)