TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fep15_dre selenoprotein [Danio rerio]
         (138 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01003436.1| Ascogregarina taiwanensis CLRanP135-D07.g1.ab...    26   1.4  
gb|ABJQ01004656.1| Ascogregarina taiwanensis CLRanP153-F07.b1.ab...    26   1.9  
gb|ABJQ01003405.1| Ascogregarina taiwanensis Contig3746, whole g...    24   5.4  
gb|ABJQ01003990.1| Ascogregarina taiwanensis CLRanP91-G08.g1.ab1...    24   7.1  
gb|ABJQ01003411.1| Ascogregarina taiwanensis Contig3753, whole g...    24   7.1  
gb|ABJQ01005316.1| Ascogregarina taiwanensis CLRanP116-G11.g1.ab...    23   9.3  
gb|ABJQ01002936.1| Ascogregarina taiwanensis Contig3262, whole g...    23   9.3  

>gb|ABJQ01003436.1| Ascogregarina taiwanensis CLRanP135-D07.g1.ab1, whole genome
           shotgun sequence
          Length = 693

 Score = 26.2 bits (56), Expect = 1.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 2   WLTLVALLALCATGRTAENLSES 24
           W T +  L LC  GR  ENL  S
Sbjct: 668 WATQIVALKLCCRGRPRENLGGS 600


>gb|ABJQ01004656.1| Ascogregarina taiwanensis CLRanP153-F07.b1.ab1, whole genome
           shotgun sequence
          Length = 843

 Score = 25.8 bits (55), Expect = 1.9
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 4/23 (17%)
 Frame = +3

Query: 1   MWLTLVALLALCA----TGRTAE 19
           MWLTL+ +LA+CA    T R+ E
Sbjct: 420 MWLTLLGVLAMCALIFLTARSVE 488


>gb|ABJQ01003405.1| Ascogregarina taiwanensis Contig3746, whole genome shotgun sequence
          Length = 6824

 Score = 24.3 bits (51), Expect = 5.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 53   ELYNFLMERWALYHNLEYDSGEDKNPRLIFYNDKDEEVKV 92
            E  N L E W L    EYD      P+L   NDK EE+ +
Sbjct: 1337 EAQNPLAEFWKLKR--EYDQA--LKPKLTLVNDKGEELSL 1444


>gb|ABJQ01003990.1| Ascogregarina taiwanensis CLRanP91-G08.g1.ab1, whole genome shotgun
           sequence
          Length = 849

 Score = 23.9 bits (50), Expect = 7.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 89  EVKVVPVKKMKADEISSLLDSLGFYK--RSEKGEEVPEEFKH 128
           ++K  P K     EI   + S G  +  ++ KG+E P  FKH
Sbjct: 278 QLKDRPAKVKVRKEILVFIRSSGHSRDWKATKGDEAPPPFKH 153


>gb|ABJQ01003411.1| Ascogregarina taiwanensis Contig3753, whole genome shotgun sequence
          Length = 5646

 Score = 23.9 bits (50), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 83  YNDKDEEVKVVPVKKMK-ADEISSLLDSLGFYKR 115
           Y+D  E V V   +  K  DE+ SLL ++G+ +R
Sbjct: 426 YSDPREVVAVQETRAPKNRDELRSLLGTIGYVRR 527


>gb|ABJQ01005316.1| Ascogregarina taiwanensis CLRanP116-G11.g1.ab1, whole genome
          shotgun sequence
          Length = 836

 Score = 23.5 bits (49), Expect = 9.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 38 LVAPSVVGUSIKKMPELYNFLM 59
          L  P+ V  +    PELYNFLM
Sbjct: 66 LQVPARVPQNFLAAPELYNFLM 1


>gb|ABJQ01002936.1| Ascogregarina taiwanensis Contig3262, whole genome shotgun sequence
          Length = 3320

 Score = 23.5 bits (49), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 10   ALCATGRTAENLSESTTDQDKLV 32
            ALC TGR+  N S  +   D+L+
Sbjct: 1212 ALCDTGRSDPNKSAKSVCSDRLI 1144


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 858,938
Number of Sequences: 5379
Number of extensions: 8685
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of query: 138
length of database: 2,049,803
effective HSP length: 78
effective length of query: 60
effective length of database: 1,630,241
effective search space: 97814460
effective search space used: 97814460
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)