genewise output
Score 18.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SelJ_tetraodon_  161 EGIPASWSSRTQRYE                                   
                     E +P+SWS++  R++                                   
                     EPLPSSWSAKRGRWQ                                   
supercontig_1.120134 gcccattagacgatc                                   
                     actcgcggcagggga                                   
                     gttattgcaaatagg                                   


//
>supercontig_1.1:subseq(1547859,50000).pep
EPLPSSWSAKRGRWQ
//
>supercontig_1.1:subseq(1547859,50000).[20134:20178].sp
GAGCCTCTTCCAAGTTCTTGGAGCGCAAAACGAGGTAGATGGCAG
//
supercontig_1.1:subseq(1547859,50000)	GeneWise	match	20134	20178	18.35	+	.	supercontig_1.1:subseq(1547859,50000)-genewise-prediction-1
supercontig_1.1:subseq(1547859,50000)	GeneWise	cds	20134	20178	0.00	+	0	supercontig_1.1:subseq(1547859,50000)-genewise-prediction-1
//

genewise output
Score 39.91 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SelJ_tetraodon_  115 AFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGI 
                     A+ AA++ VL + N  +A+      GG   SRG  IG   GA  G+E I 
                     ALPAAIYLVLRSKNLEEALIANALLGGDAASRGMVIGMIFGASQGIEAI 
supercontig_1.-20188 gccggatcgtctaatgggcagagccgggggtcgagagaatggacgagga 
                     ctccctatttgcaataacttcacttggacccggtttgtttgcgagtact 
                     tgctcccctgccgcgagtgtccctttcttagccggtcgcttgcactgcc 


SelJ_tetraodon_  164 PASWSSRTQRYESV                                    
                     PA W S  +  +S+                                    
                     PARWISSLRSLDSL                                    
supercontig_1.-20041 cgctattcctcgtc                                    
                     ccggtcctgctact                                    
                     tgcgtggggaccgc                                    


//
>supercontig_1.1:subseq(1547859,50000).pep
ALPAAIYLVLRSKNLEEALIANALLGGDAASRGMVIGMIFGASQGIEAIPARWISSLRSL
DSL
//
>supercontig_1.1:subseq(1547859,50000).[20188:19998].sp
GCTCTGCCCGCTGCCATCTACCTCGTTTTGCGCTCCAAGAACTTGGAAGAGGCTCTGATT
GCCAACGCCCTTCTTGGTGGCGATGCTGCATCGCGCGGCATGGTGATTGGCATGATCTTT
GGTGCGAGCCAAGGCATTGAGGCCATCCCTGCGCGCTGGATTTCGTCGCTGCGGTCACTC
GACTCGCTC
//
supercontig_1.1:subseq(1547859,50000)	GeneWise	match	20188	20000	39.91	-	.	supercontig_1.1:subseq(1547859,50000)-genewise-prediction-1
supercontig_1.1:subseq(1547859,50000)	GeneWise	cds	20188	20000	0.00	-	0	supercontig_1.1:subseq(1547859,50000)-genewise-prediction-1
//