TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349470.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    60   1e-09
gb|GL349503.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    29   2.7  
gb|GL349459.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   6.0  
gb|GL349476.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   7.8  

>gb|GL349470.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.38,
             whole genome shotgun sequence
          Length = 356648

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
 Frame = +2

Query: 98    HEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIG 157
             H V V +C   GY  H+  + ++L  + P             ++ +G  Y VG  R  +G
Sbjct: 53639 HGVFVAFCQS*GYANHFRALRQALASAAPG------------VEVIGTNYPVGTLRAALG 53782

Query: 158   NIL--STGFLASIAI--SFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQS 213
              ++  S    A + +  +    +L   +P  +          +V   F+ NM+ S L  +
Sbjct: 53783 QMIMFSVPLFALVVVYANEICAWLDVPVPDALLYLASSKLMHIVVYYFVANMLVSQLTTT 53962

Query: 214   GAFEVYLNGSLIYSKLETGAVPTAETLADHILRQI 248
             GAFE+Y++G L++SKL  G  P  +   D ++R +
Sbjct: 53963 GAFELYVDGKLVFSKLTLGHAPAIDQAVDLVIRAL 54067


>gb|GL349503.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.71,
             whole genome shotgun sequence
          Length = 131184

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = -1

Query: 65    HHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRS 124
             HH+  +R + L   KL++RE     A     V  E +       G+  ++ ++A    R 
Sbjct: 79800 HHVVQRRTVRLGHRKLDERENENHNASRRLAVSREHK-------GHGHYHRKLAPHDRRL 79642

Query: 125   LPPELREQQKGKKPFIKFV 143
             +PP L  + + K+P ++ V
Sbjct: 79641 VPPALVHKPRHKEPVLEHV 79585


>gb|GL349459.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.27,
              whole genome shotgun sequence
          Length = 436348

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
 Frame = +3

Query: 43     KYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLE---KREEA--------LRKAR 91
              ++LE  + A    + H   EA      +R  + A  +LE   KREEA         RKA 
Sbjct: 351132 EHLERRQAAHRSHLEHTIAEAEAAYELRRAELDAKTRLERARKREEAQALADAARYRKAT 351311

Query: 92     VTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIK 141
                 T  HE R++       R+H  E A    R    E R++ +G +  ++
Sbjct: 351312 REATDAHEARLQAELADARRQHRAEAAALRRRIQHLESRQKHEGHEAEVR 351461


>gb|GL349476.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.44,
              whole genome shotgun sequence
          Length = 310991

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +2

Query: 48     LKEADLKQMLHEKGEAFHH-----LRSKRELILAVLKLEKREEALRKARV 92
              ++  D    + E GEA HH     LRS+R  ILA ++  K    LR  R+
Sbjct: 106910 VRRPDALITIGENGEAQHHVRVRKLRSRRRHILADVRHRKELARLRHGRI 107059


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,183,377
Number of Sequences: 131
Number of extensions: 93608
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 36
length of query: 259
length of database: 9,560,209
effective HSP length: 97
effective length of query: 162
effective length of database: 9,547,502
effective search space: 1546695324
effective search space used: 1546695324
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)