TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743904.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    42   0.001
gb|GG743890.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    32   0.57 
gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    31   1.6  
gb|GG743894.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    28   8.2  

>gb|GG743904.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.22, whole
              genome shotgun sequence
          Length = 463319

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
 Frame = +2

Query: 100    VRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGNI 159
              VR+E+CS  GY  +Y EV + L  + P  +     G      +   + SV      IG +
Sbjct: 134018 VRIEFCSS*GYANNYREVQKYLEANYPHLIGRISGGNALPPPWKQQLASV------IGYL 134179

Query: 160    LSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVG-AGFM-MNMVASSLLQSGAFE 217
                 GF   +A       L  +LP  +  +++         AG M +  ++ S+L +GAFE
Sbjct: 134180 QMAGFAFLLAGEHILGAL--SLPADLPLFVQMRENKFAAFAGLMILGSMSQSMLATGAFE 134353

Query: 218    VYLNGSL 224
              VY NG++
Sbjct: 134354 VYFNGAM 134374


>gb|GG743890.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.8, whole
              genome shotgun sequence
          Length = 845095

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 180    ALPPHIAEWIEQHRGMVVGAGFMMNMVASSL--LQSGAFEVYLNGSLIYS 227
              ALPPH   ++E    +VVG   + N    ++  L SG+ +VY++ + IY+
Sbjct: 453132 ALPPHALSYLEAVGDVVVGPRVLSNATTKNIHVLLSGSGDVYIDDTNIYA 453281


>gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.5, whole
              genome shotgun sequence
          Length = 1129684

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
 Frame = -1

Query: 181    LPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEVYLNG----------------SL 224
              L P   +   +++ M +    M++ V   L  +GAFEV+LNG                 L
Sbjct: 965254 LAPVYLQKYRENKFMALPIVMMLSPVRQMLSNTGAFEVHLNGIPARF*IGLDRIRSVDEL 965075

Query: 225    IYSKLETGAVPTAE 238
              +YS LET ++ T E
Sbjct: 965074 VYSMLETRSLLTFE 965033



 Score = 29.3 bits (64), Expect = 4.8
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 181    LPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEVYLNGSLIYSKLETGAVPTAET 239
              LP    +   Q+R +V     +++ +   L  +GAFEVY+NG+  +  +   A P  +T
Sbjct: 964229 LPDETLQKYNQYRFVVFPMIMILSPLRQMLSNTGAFEVYINGA--HLSMHVHAHPVLQT 964059


>gb|GG743894.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.12, whole
              genome shotgun sequence
          Length = 690970

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = -3

Query: 70     KRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLL--RSLPP 127
              K EL++           LR+ RV    +  VRV  C     R+H EE  E +L  +   P
Sbjct: 270983 KHELVVFEEAFGDAAHHLREKRVAQEGEAPVRVRRCRREHARQHLEEERERVLVQKVYRP 270804

Query: 128    ELREQQKGKKPFIK----FVGVVYSVGAFREFIGNI 159
              E+ E+++  +  ++     VG   +VG     +G++
Sbjct: 270803 EVLERKEELRARVRERLELVGRELNVGHRHVRVGHV 270696


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,992,757
Number of Sequences: 1445
Number of extensions: 154732
Number of successful extensions: 801
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 339
length of query: 259
length of database: 17,710,878
effective HSP length: 101
effective length of query: 158
effective length of database: 17,564,933
effective search space: 2775259414
effective search space used: 2775259414
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)