TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    30   1.8  
gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    29   5.1  
gb|GL376558.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    29   5.1  
gb|GL376615.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    28   8.7  
gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    28   8.7  

>gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582027,
              whole genome shotgun sequence
          Length = 666937

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
 Frame = +2

Query: 57     LHEKGEAFHHLR-----------SKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYC 105
              L+E+G   HH R           ++R+L++     E+   ALR ARV    Q E   E+ 
Sbjct: 574685 LNERGNDAHHGRI*VEAERRDGHAQRQLVVVARGRERLRHALRIARVHQFAQRERAREHD 574864

Query: 106    SGXGYRRHY------EEVAESL-LRSLPPELREQQKGKKPFIK 141
                    RH+      E   ++L LR    + REQQ+ ++  I+
Sbjct: 574865 GQVDQERHHGHEHRAERSGQALALRRKQHDDREQQRHERERIE 574993


>gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582028,
              whole genome shotgun sequence
          Length = 960197

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 97     QHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQ 132
              Q E RVEYC G   RRH         +S PP +REQ
Sbjct: 213075 QQEWRVEYCGGCRRRRH---DGPDEPQSPPPTVREQ 212977


>gb|GL376558.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581239,
              whole genome shotgun sequence
          Length = 719819

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +2

Query: 148    SVGAFREFIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIE--QHRGMVVGAGFMMNM 205
              SV    E I  ++   FLA+  IS++ PF  G     I +W+   Q  G+   A + ++ 
Sbjct: 268520 SVSFLSESILALIGDTFLAAACISYYGPFTGGFRARIIEKWVSSTQQLGIPCSANYSLSN 268699

Query: 206    VASS 209
                 S
Sbjct: 268700 TLGS 268711


>gb|GL376615.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582018,
             whole genome shotgun sequence
          Length = 689162

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +2

Query: 59    EKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEV 100
             ++GE+     ++REL+  +LKL ++++AL+   +T   ++E+
Sbjct: 23897 QEGESLPTSENERELLQELLKLREKKDALQLQIITSEEENEL 24022


>gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313,
               whole genome shotgun sequence
          Length = 1115623

 Score = 28.1 bits (61), Expect = 8.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 222     GSLIYSKLETGAVPTAETLADHILRQI 248
               G ++  +LETGA  TAE LA  +LR++
Sbjct: 1089239 GVVVTCELETGATATAEGLAGLVLRRV 1089319


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,868,946
Number of Sequences: 82
Number of extensions: 126870
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 80
length of query: 259
length of database: 14,267,206
effective HSP length: 100
effective length of query: 159
effective length of database: 14,259,006
effective search space: 2267181954
effective search space used: 2267181954
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)