TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    51   7e-07
gb|CM000626.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    31   0.77 
gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   1.7  

>gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 17, whole genome
             shotgun sequence
          Length = 703943

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 10/188 (5%)
 Frame = -3

Query: 82    KREEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIK 141
             ++  + R   + D  QH V++ +C+G G +R++  V +  L    PELR           
Sbjct: 86778 RKSHSPRIKNMEDAAQH-VKILFCNG*GMKRNFLNV-QKFLEDQFPELRGH--------- 86632

Query: 142   FVGVVYSVGAFREFIGNILSTGFLASI--------AISFFAPFLRGALPPHIAEWIEQHR 193
               G  Y   A  E   N++S   L  I         I  F  + +  LP  +   I Q+ 
Sbjct: 86631 ITGANYPPPATIELAANLMSVIQLMGIFWIVAGGEKIFRFLGYPQNQLPS-VYHTINQN- 86458

Query: 194   GMVVGAGFMMNMVA--SSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHILRQIISG 251
              M +G    + +        Q+GAFEVYLN   I+SKL  GA PTA+ L   +++     
Sbjct: 86457 AMPIGIFLFLILPQWIGRYTQTGAFEVYLNDKEIFSKLSKGAFPTADDLISSLVQ----- 86293

Query: 252   TAAGTRTA 259
               AG +TA
Sbjct: 86292 --AGLQTA 86275


>gb|CM000626.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 24, whole genome
             shotgun sequence
          Length = 511739

 Score = 30.8 bits (68), Expect = 0.77
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +3

Query: 201   FMMNMVASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHILRQII 249
             F  N++    L S A  +Y  G+++   L+TGAVP AE+LA H  + ++
Sbjct: 17928 FYSNLIPQVGLLSYAGNIY--GNIV---LDTGAVPNAESLAGHYAKALV 18059


>gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun
              sequence
          Length = 1098047

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 67     LRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHY 114
              L SKR+      +LE ++ +L+K        H+ R  +CS    RR+Y
Sbjct: 264763 LPSKRDFRRIHFRLETKQGSLKKRSSPSRTSHQKRRRFCSELDERRNY 264620


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,489,516
Number of Sequences: 31
Number of extensions: 71635
Number of successful extensions: 308
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 21
length of query: 259
length of database: 7,911,228
effective HSP length: 96
effective length of query: 163
effective length of database: 7,908,252
effective search space: 1289045076
effective search space used: 1289045076
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)