TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   4.0  
gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   8.9  

>gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold2,
              whole genome shotgun sequence
          Length = 3242543

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 31     DNEATDYSSHRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKA 90
              +N  +  +S++     + K +  K+ +    E     R KRE++ A ++ EKRE++L K 
Sbjct: 402234 NNSISSSNSNKSNIRSINKSSTFKKCIDVDEE-----RRKREVVSASIRKEKREDSLAKK 402398

Query: 91     RVTDT 95
              R   T
Sbjct: 402399 RSIQT 402413


>gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold9,
               whole genome shotgun sequence
          Length = 2264991

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +2

Query: 151     AFREFIGNILSTGFLASIAISFFAPFLRGA--LPPHIAEWIEQHRGMVVGAGFMMNMVAS 208
               +F+ F   ++STGFLA   +      L GA    P +A +     G  V  GF ++++  
Sbjct: 1915322 SFKVFYLVVVSTGFLADSLVDSLIVSLIGAGF*EPEVALF---GTGTTVTVGFGVSVLVE 1915492

Query: 209     SLLQSGAFEVYLNGS-LIYSKLETGAVPTAET 239
               +   S      +NG+ ++ + +ETGA P  +T
Sbjct: 1915493 TFGSSDG----INGAGVVAAGVETGADPVVDT 1915576


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,826,649
Number of Sequences: 42
Number of extensions: 76969
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 16
length of query: 259
length of database: 10,980,844
effective HSP length: 98
effective length of query: 161
effective length of database: 10,976,728
effective search space: 1767253208
effective search space used: 1767253208
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)