TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000782.1| Hyaloperonospora parasitica strain Emoy2 v-7....    32   1.2  
gb|ABWE01000178.1| Hyaloperonospora parasitica strain Emoy2 v-7....    32   1.2  
gb|ABWE01000702.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   2.0  
gb|ABWE01002071.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   4.5  

>gb|ABWE01000782.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont280.1, whole
            genome shotgun sequence
          Length = 28059

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 97   QHEVRVEYCSGXGYRRHYEEVAESLLRS 124
            Q +  V YCSG  +RRHY     SLL S
Sbjct: 8914 QCKCNVRYCSGSSHRRHYRSSKPSLLHS 8997


>gb|ABWE01000178.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont23.9, whole genome
             shotgun sequence
          Length = 65306

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 97    QHEVRVEYCSGXGYRRHYEEVAESLLRS 124
             Q +  V YCSG  +RRHY     SLL S
Sbjct: 59460 QCKCNVRYCSGSSHRRHYRSSKPSLLHS 59543


>gb|ABWE01000702.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont176.6, whole
             genome shotgun sequence
          Length = 30782

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 180   ALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGA-FEVYLNGSLIYSKLETGAVPTAE 238
             A+P H     + HR +V+GAGF+   VA +L   G      L  +L++ +   GA     
Sbjct: 22746 AVPSHNGR-TDVHRVLVIGAGFLGCEVACALATDGRNHPDRLQTTLVFVEHAPGARTLPR 22570

Query: 239   TLADHILRQII 249
              LAD + R+++
Sbjct: 22569 YLADDLARRLV 22537


>gb|ABWE01002071.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont778.1, whole
            genome shotgun sequence
          Length = 6013

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 159  ILSTGFLASIAISFFAPFLRGALPPH 184
            +LS  FLA IA   F P ++ +LPPH
Sbjct: 5707 VLSDAFLAVIAYIKFGPNIKASLPPH 5784


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,176,052
Number of Sequences: 5422
Number of extensions: 188058
Number of successful extensions: 829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 372
length of query: 259
length of database: 22,486,378
effective HSP length: 103
effective length of query: 156
effective length of database: 21,927,912
effective search space: 3420754272
effective search space used: 3420754272
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)