TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genom...    42   0.002
emb|FN649743.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   9.9  
emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom...    30   9.9  

>emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG02
          Length = 9289656

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 4/146 (2%)
 Frame = -2

Query: 99      EVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGN 158
               +V V++C   G RR++EE+  S L +  P L + Q  +       G +Y      + +  
Sbjct: 9200003 QVLVQFCVS*GMRRNFEEL-RSFLHAHYPALAKAQSIR-------GELYPPPPMAQALAT 9199848

Query: 159     ILSTGFLASIAISFFAPFL--RGALPPHIAEWIEQHRGMVVGAGFMM-NMVASSLLQSGA 215
               + S   +  +A   F   +  R  +P      + +   M    G  + N    SLL +GA
Sbjct: 9199847 LGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGA 9199668

Query: 216     FEVYLNGSLIYSKLE-TGAVPTAETL 240
               FEV ++G L++S+L   G  PT   L
Sbjct: 9199667 FEVSIDGELVFSRLAGEGQFPTGALL 9199590


>emb|FN649743.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG18
          Length = 4589578

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 94      DTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELR 130
               +T  H VRV YC G G+    +E+ + ++++   ELR
Sbjct: 3907245 NTTGHGVRVGYCRGVGFV*RNDEIRKGVIKNQNTELR 3907135


>emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly,
                unassigned sequences LGUn
          Length = 58155991

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 78       LKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQ 133
                L+L+    ++   R+T +  H   + + +G  YR H    +    RSL  +LREQQ
Sbjct: 41735352 LRLKVEG*SVHFRRITSSASHTSSLWHDAGNLYRGHRGRTSSCCARSLAHDLREQQ 41735519


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,279,800
Number of Sequences: 35
Number of extensions: 683146
Number of successful extensions: 3427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3313
Number of HSP's gapped (non-prelim): 330
length of query: 259
length of database: 65,311,373
effective HSP length: 110
effective length of query: 149
effective length of database: 65,307,523
effective search space: 9730820927
effective search space used: 9730820927
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)