TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol...    35   0.016
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    26   9.8  

>gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun
             sequence
          Length = 1080900

 Score = 35.0 bits (79), Expect = 0.016
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
 Frame = +1

Query: 102   VEYCSGXGYRRHYEEVAESLL-RSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGNIL 160
             ++YC   G R  Y++V   L  R   P+ +      KP   + G+ Y++ A +      +
Sbjct: 55489 IQYCDTCGTRNLYQQVQSYLSSRVTDPDFQLIAVKYKPSPLYQGLSYAITASQ------V 55650

Query: 161   STGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEVYL 220
               G  A +  S F P  +   P         H  M++  G   N++      S AFE+YL
Sbjct: 55651 GLGLSAFLFPSLFTPTDQQGQPQGGPR---THLMMLIFFGG--NILRGLFTNSNAFEIYL 55815

Query: 221   NGSLIYSKLETGA 233
                L+YS ++  +
Sbjct: 55816 GKDLVYSAIQNNS 55854


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
             sequence
          Length = 1104417

 Score = 25.8 bits (55), Expect = 9.8
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 139   FIKFVGVVYSVGAFREFIGNILSTGFLASIAISFFAPFLRGAL 181
             +++ +G  +S+ A  EF+   L+ G+L    I FF PF + A+
Sbjct: 69299 YLETIGFEHSI-AENEFL*IFLAAGYLIMSNILFFHPFQKKAI 69174


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,900,108
Number of Sequences: 8
Number of extensions: 22886
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 13
length of query: 259
length of database: 3,034,108
effective HSP length: 89
effective length of query: 170
effective length of database: 3,033,396
effective search space: 515677320
effective search space used: 515677320
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)