TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927] PARTIALLY FROM XP_844760.1 (259 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 29 3.4 supercontig_1.6 of Capsaspora owczarzaki ATCC 30864 28 7.6 supercontig_1.5 of Capsaspora owczarzaki ATCC 30864 28 7.6 supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 28 7.6 supercontig_1.10 of Capsaspora owczarzaki ATCC 30864 27 9.9 supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 27 9.9 supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 27 9.9 >supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 Length = 2526540 Score = 28.9 bits (63), Expect = 3.4 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = -1 Query: 44 YLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEV 100 YL+ KEADL+ L ++G+ H R RE ++ K E E K + + +V Sbjct: 1290522 YLDSEKEADLQHKLEKRGK---HQRQFREAFPSLSKAEAESEDAPKKKSSKRAAEDV 1290361 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = -3 Query: 130 REQQKGKKPFIKFVGVVYSVGAFREFIGNILSTGFLASIAISFFAPFLRGALPPHI 185 +E+QK + + G ++G + L GFL + FFAP + L PH+ Sbjct: 1136653 KEKQKTQPSILNLEG---AIGLKKSNASRFLLFGFLGFLGFVFFAPKMFSPLLPHL 1136495 >supercontig_1.6 of Capsaspora owczarzaki ATCC 30864 Length = 1617845 Score = 27.7 bits (60), Expect = 7.6 Identities = 23/73 (31%), Positives = 34/73 (46%) Frame = -2 Query: 185 IAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHI 244 IA+ + Q R +GAG + + A L A ++ S+L T A+ A+ A H Sbjct: 198781 IAKGVVQWRDGAIGAGKVGELEAKWALGRFASRLHFAAC---SRLRTRALRCAKCAAWHS 198611 Query: 245 LRQIISGTAAGTR 257 + GTA GTR Sbjct: 198610 QCCFLGGTAKGTR 198572 >supercontig_1.5 of Capsaspora owczarzaki ATCC 30864 Length = 1755934 Score = 27.7 bits (60), Expect = 7.6 Identities = 19/76 (25%), Positives = 35/76 (46%) Frame = +3 Query: 65 HHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRS 124 HHLR+ ++L + L + ALR+ + V + + C G RH+ + + Sbjct: 1204569 HHLRAAPCVVLVLAALLCAQGALRQCQERYCVCLDWQARICRGRQAGRHHWSLDQGRSAL 1204748 Query: 125 LPPELREQQKGKKPFI 140 L P+ +Q+ K F+ Sbjct: 1204749 LAPDHHGRQRT*KLFL 1204796 Score = 27.3 bits (59), Expect = 9.9 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Frame = +1 Query: 154 EFIGNILSTGF---LASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSL 210 EF G S G LA + G++PP IA+W + +VVG + AS Sbjct: 1599610 EFAGLAASIGIRIGLAHAGRQACSANAEGSVPPRIAQWTRKQPCLVVGGQESVLPSASRS 1599789 Query: 211 LQSGAFEVY 219 LQ A ++ Sbjct: 1599790 LQRRAAGIH 1599816 >supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 Length = 2141673 Score = 27.7 bits (60), Expect = 7.6 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -2 Query: 147 YSVGAFREFIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVV 197 YS AF FI L FLA+I+ S F P++ + PP ++ I ++V Sbjct: 1525436 YSCAAFFFFISFYLFL-FLAAISSSSFTPYVVRSFPPPLSPQIPTFECVIV 1525287 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = -2 Query: 212 QSGAFEVYLNGSLIYSKLETG 232 +S +FEV +NG L++SKL +G Sbjct: 1788275 RSKSFEVTINGELVHSKLTSG 1788213 >supercontig_1.10 of Capsaspora owczarzaki ATCC 30864 Length = 1357310 Score = 27.3 bits (59), Expect = 9.9 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 8/96 (8%) Frame = -3 Query: 56 MLHEKGEAFHHLRSKRELILAVLKLEKREEALRKA--------RVTDTVQHEVRVEYCSG 107 +L E+G+ L +L A + + R+ L+KA + T+ Q + CS Sbjct: 534690 LLSEEGQEIDRLEQNIKLRQAHKRRQCRQ*DLKKAGFRKHVKKK*TELQQRKAAYLACSV 534511 Query: 108 XGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFV 143 R H ++ + +L PP L Q P + V Sbjct: 534510 FAARNHPRQLVKGILHVFPPPLLGYQVQLSPIMDCV 534403 >supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 Length = 1512001 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 112 RHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVV 146 RH+EE E R+ PP R K +PF GVV Sbjct: 211321 RHHEEAQE---RASPPSSRATPKPSQPFSTLQGVV 211416 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 61 GEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHE 99 G+A HHL K++ K +K+++ +K + T HE Sbjct: 688273 GDALHHLPKKKKQKKKKKKKKKKKKKKKKKKKTKATSHE 688389 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.321 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,430,232 Number of Sequences: 89 Number of extensions: 82648 Number of successful extensions: 458 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 398 Number of HSP's gapped (non-prelim): 194 length of query: 259 length of database: 9,347,932 effective HSP length: 97 effective length of query: 162 effective length of database: 9,339,299 effective search space: 1512966438 effective search space used: 1512966438 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)