TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 geno...    33   0.048
gb|DS989731.1| Cryptosporidium muris RN66 scf_1106632373451 geno...    28   2.6  
gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    28   2.6  
gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 geno...    27   5.8  

>gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 genomic scaffold, whole
              genome shotgun sequence
          Length = 367275

 Score = 33.5 bits (75), Expect = 0.048
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 7/156 (4%)
 Frame = +1

Query: 102    VEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGNILS 161
              ++YC     +  Y+++   L            +   P  +F+ + Y++    +F+   ++
Sbjct: 238585 IQYCDTCSTKSLYQQLQSYL----------SSRVTDPDFQFIPMKYNMSPLNKFLSYGIT 238734

Query: 162    TGFLASIAISFFAPFLRGALPP--HIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEVY 219
              T  +     +F  P +  A  P    A     H  M++  G   N++      S AFEVY
Sbjct: 238735 TCQVGLGLSAFLFPNIFSATGPDGQPAGGPRTHLFMLIFFGG--NILRGLFTNSNAFEVY 238908

Query: 220    LNGSLIYSKLETGA-----VPTAETLADHILRQIIS 250
              L   L+YS L   +      PT E + + + +  IS
Sbjct: 238909 LGTELVYSALNNNSSGYATPPTIEQIGEILTKHGIS 239016


>gb|DS989731.1| Cryptosporidium muris RN66 scf_1106632373451 genomic scaffold, whole
              genome shotgun sequence
          Length = 589013

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 38     SSHRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELI 74
              +SH +K+LE+L    ++  L +K    HHL++  E++
Sbjct: 110460 ASHLFKFLELLLILKVQNYLEQKYLICHHLQTYLEIL 110350



 Score = 26.9 bits (58), Expect = 4.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 203   MNMVASSLLQSGAFEVYLNGSLIYSKLETGAV 234
             +N+    +L    F +YLNGS I S +++  +
Sbjct: 50453 LNIAILLILLESTFRIYLNGSFIISSIKSSTI 50358


>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole genome
               shotgun sequence
          Length = 1324930

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = -1

Query: 47      MLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCS 106
               +LK  DLK++L E+G +      K++LI A+L+ + + EAL    + D ++     + CS
Sbjct: 1273477 LLKIDDLKELLRERGLSV--TGRKQQLIDALLEYDAKLEALNNDPI-DIIEESSMEKECS 1273307



 Score = 27.3 bits (59), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = -2

Query: 112    RHYEEVAESLLRSLPPELREQQKGK-----KPFIKFVGVVYSVGAFREFIGNILS 161
              +HY+    S+  ++PP  +   K K        IKFV +VY  G  R    NIL+
Sbjct: 212433 KHYKSQYPSVYWTIPPYYKTSYK*KV*INTSKIIKFVILVYKGGKVRV*FSNILT 212269


>gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 genomic scaffold, whole
              genome shotgun sequence
          Length = 772423

 Score = 26.6 bits (57), Expect = 5.8
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 216    FEVYLNGSLIYSKLET 231
              FE+Y+NG L +SKL+T
Sbjct: 414080 FEMYINGELPFSKLDT 414033


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,941,447
Number of Sequences: 84
Number of extensions: 23280
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 31
length of query: 259
length of database: 3,081,750
effective HSP length: 90
effective length of query: 169
effective length of database: 3,074,190
effective search space: 519538110
effective search space used: 519538110
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)