TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp...    32   0.24 
dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl...    27   7.8  
dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp...    27   7.8  

>dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete
             sequence
          Length = 1282939

 Score = 32.0 bits (71), Expect = 0.24
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 62    EAFHHLRSKRELIL--AVLKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRR 112
             E  HHLR+KR +      +  E    +LR++R   T +   R + CS  GYRR
Sbjct: 51082 ECAHHLRTKRRMCA*RRTISRE*TSLSLRRSRSLQTPRCGWRTKPCSSKGYRR 51240


>dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete
              sequence
          Length = 739753

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 189    IEQHRGMVVGAGFMMNMVASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHI 244
              +++  G+ V  G +     SSL+Q+   ++YLN   +  K E   +  A  +  HI
Sbjct: 710930 VQERSGVAVRFGDVARR*RSSLVQAPDSDLYLNHGAVSMKEEEEMI*NAPEICSHI 711097


>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
              sequence
          Length = 908485

 Score = 26.9 bits (58), Expect = 7.8
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
 Frame = +1

Query: 51     ADLKQMLHEKGEAFHHLRSK------RELILAVLKLEKREEALRKARVTDTVQH------ 98
              A+L  +  E  EA      +      ++L+ A+ +LE++ +A R+   T+ +        
Sbjct: 806623 AELASVREENAEAVREETQRMRRDYEQKLLQALKELEEQFDAYRQ-EATEALGRWQRRCI 806799

Query: 99     EVRVEYCSGXGYRRHYEEVAESLLRS---LPPELREQ 132
              E+  E+C      RHY + +E+L RS   L  +L++Q
Sbjct: 806800 EMEREHCEMSELLRHYRQKSEALTRSRDALERQLQDQ 806910


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,902,871
Number of Sequences: 20
Number of extensions: 51810
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 30
length of query: 259
length of database: 5,515,582
effective HSP length: 94
effective length of query: 165
effective length of database: 5,513,702
effective search space: 909760830
effective search space used: 909760830
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)