TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668646.1| Blastocystis hominis, Singapore isolate B (sub-t...    37   0.007
emb|FN668647.1| Blastocystis hominis, Singapore isolate B (sub-t...    36   0.019

>emb|FN668646.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_16
          Length = 433969

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
 Frame = +1

Query: 196    VVGAGFMMNMVASSLLQSGAFEVYLNG-----------SLIYSKLETGAVPTAETLADHI 244
              ++G   ++N +   L +SGAFE+Y NG            L+ SKL +G  P  ET+ + I
Sbjct: 235045 IMGVVAVLNYLCEYLQKSGAFEIYFNGIS*IMCV*RLDKLVSSKLASGDYPEEETITNFI 235224

Query: 245    LRQ 247
               +Q
Sbjct: 235225 DKQ 235233


>emb|FN668647.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
             shotgun sequence assembly, scaffold_17
          Length = 414243

 Score = 35.8 bits (81), Expect = 0.019
 Identities = 19/74 (25%), Positives = 44/74 (59%)
 Frame = -3

Query: 185   IAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHI 244
             + E ++++R +++   ++   + ++ + +GAFEVY + +L++SKLE    PT + ++ H 
Sbjct: 82501 LLEGLKKNRYLILMFCYLGYYITTNFVFAGAFEVYFDDTLVFSKLEKMRYPTLD-VSIHF 82325

Query: 245   LRQIISGTAAGTRT 258
             L   +   A+  R+
Sbjct: 82324 LSCCLGLEASAERS 82283


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,462,387
Number of Sequences: 54
Number of extensions: 58767
Number of successful extensions: 267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 8
length of query: 259
length of database: 6,272,415
effective HSP length: 94
effective length of query: 165
effective length of database: 6,267,339
effective search space: 1034110935
effective search space used: 1034110935
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)