TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelT #Volvox carteri f. nagariensis (241 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349470.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 74 6e-14 gb|GL349493.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 35 0.057 gb|GL349480.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 29 3.1 gb|GL349456.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 5.3 gb|GL349490.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 6.9 gb|GL349475.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 9.0 gb|GL349468.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 9.0 gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 9.0 >gb|GL349470.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.38, whole genome shotgun sequence Length = 356648 Score = 74.3 bits (181), Expect = 6e-14 Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 2/143 (1%) Frame = +2 Query: 38 PDGGLSLGGR-VHISFCSSXGMRGAFGQVQQLVRTRFPGVEVHGTTYPLPAWKRPLVTAA 96 P+ GL + V ++FC S G F ++Q + + PGVEV GT YP+ + L Sbjct: 53612 PENGLVVPNHGVFVAFCQS*GYANHFRALRQALASAAPGVEVIGTNYPVGTLRAALGQMI 53791 Query: 97 R-SIQMTALAFCIAGDHIFRQLGMQPVAWYTQNVASNRPGAVMGVWFVGNMLITNLQNTG 155 S+ + AL A + I L + PV +AS++ ++ +FV NML++ L TG Sbjct: 53792 MFSVPLFALVVVYANE-ICAWLDV-PVPDALLYLASSKLMHIVVYYFVANMLVSQLTTTG 53965 Query: 156 AFEIYFDGQLIFSKLAEGRMPTM 178 AFE+Y DG+L+FSKL G P + Sbjct: 53966 AFELYVDGKLVFSKLTLGHAPAI 54034 >gb|GL349493.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.61, whole genome shotgun sequence Length = 239416 Score = 34.7 bits (78), Expect = 0.057 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -2 Query: 48 VHISFCSSXGMRGAFGQVQQLVRTRFPGVEVHGTTYPLP 86 +HI +C+S G G + QV + + T FP V V G P Sbjct: 26118 IHIEYCTS*GYSGRYRQVARAITTAFPDVVVRGNELARP 26002 >gb|GL349480.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.48, whole genome shotgun sequence Length = 315632 Score = 28.9 bits (63), Expect = 3.1 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = -3 Query: 69 VRTRFPGVEVHGT--TYPLPAWKRPLVTAARSIQMTALAFCIAGDHIFRQLGMQPVAWYT 126 VRT PG G T P+ R V RS T L +CI QLG++PV+W + Sbjct: 270228 VRTEAPGRRKLGIVGTPSCPSAPRIPVLLPRS---TDLRYCIPP----MQLGIEPVSWLS 270070 Query: 127 QNVASNRPGAV 137 N A R A+ Sbjct: 270069 ANEAMMRKPAL 270037 >gb|GL349456.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.24, whole genome shotgun sequence Length = 453307 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = -1 Query: 40 GGLSLGGRVHISFCSSXGMRGAFGQVQQ 67 G ++LGGR S+ S G RG+ GQV+Q Sbjct: 258235 GVVTLGGRTGGSYRGSGGERGSGGQVRQ 258152 >gb|GL349490.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.58, whole genome shotgun sequence Length = 226779 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 19 FSADVMSMFGGARVQSPIDPDGGLSLGGRVHISFCSSXG 57 F A V+++FGG PID G S +VH + + G Sbjct: 11605 FYARVLNVFGGIIGAVPIDKSAGASTRAQVHAAAVDTNG 11489 >gb|GL349475.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.43, whole genome shotgun sequence Length = 324729 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 Query: 82 TYPLPAWKRPLVTAARSIQMTA 103 T+P PAW RP +TA R TA Sbjct: 169183 TWPRPAWSRPGLTAPRLALSTA 169248 >gb|GL349468.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.36, whole genome shotgun sequence Length = 367059 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = +3 Query: 79 HGTTYPLPAWKRPLVTAARSIQMTALAFCIAG------DHIFRQLGMQPVAW 124 +G PLPA RP+ +AA + +A A AG + R+L +Q AW Sbjct: 51948 NGHHVPLPAHNRPIPSAAHGVGESATASGRAGTAQTSTTSLTRRLCLQHFAW 52103 >gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.25, whole genome shotgun sequence Length = 436284 Score = 27.3 bits (59), Expect = 9.0 Identities = 41/157 (26%), Positives = 54/157 (34%), Gaps = 20/157 (12%) Frame = -3 Query: 10 LLLGIVGLMFSADVMSMFGGARVQSP--IDPDGGLSLGGRVHISFCSSXGMRGAFGQVQQ 67 LL F S+FGG +SP + GG S GG + G+ Q Sbjct: 414520 LLAVCASACFGLTPTSVFGGVS-ESPAWLTASGGCSNGGLPGDVVAMAGRFNGSLALAQD 414344 Query: 68 LVRTRFPGVEVHGTTYPL--------PAWKRPLVTAARSIQMTALA------FCIAGDHI 113 +V T P VH + P W R L I +T LA A + Sbjct: 414343 VVVTA-PAGSVHAFLAAVIVANGELTPFWSRVLPVGLDIIDVTCLAPATVARLSWAPSSL 414167 Query: 114 FRQLGMQP----VAWYTQNVASNRPGAVMGVWFVGNM 146 L + VAW T+ S PGA + VG + Sbjct: 414166 SWSLALHTTNGSVAWTTEIGRSQAPGAPVSPRVVGRV 414056 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.322 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,643,512 Number of Sequences: 131 Number of extensions: 166381 Number of successful extensions: 1083 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1038 Number of HSP's gapped (non-prelim): 141 length of query: 241 length of database: 9,560,209 effective HSP length: 97 effective length of query: 144 effective length of database: 9,547,502 effective search space: 1374840288 effective search space used: 1374840288 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)