TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelT #Volvox carteri f. nagariensis
         (241 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    63   1e-10
gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   5.8  
gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   5.8  

>gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 17, whole genome
             shotgun sequence
          Length = 703943

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
 Frame = -3

Query: 48    VHISFCSSXGMRGAFGQVQQLVRTRFPGVEVH--GTTYPLPAWKRPLVTAARSIQMTALA 105
             V I FC+  GM+  F  VQ+ +  +FP +  H  G  YP PA           IQ+  + 
Sbjct: 86727 VKILFCNG*GMKRNFLNVQKFLEDQFPELRGHITGANYPPPATIELAANLMSVIQLMGIF 86548

Query: 106   FCIAG-DHIFRQLGMQ----PVAWYTQNVASNRPGAVMGVWFVGNMLITNLQNTGAFEIY 160
             + +AG + IFR LG      P  ++T N  +   G  +  + +    I     TGAFE+Y
Sbjct: 86547 WIVAGGEKIFRFLGYPQNQLPSVYHTINQNAMPIGIFL--FLILPQWIGRYTQTGAFEVY 86374

Query: 161   FDGQLIFSKLAEGRMPTMAELLGPM 185
              + + IFSKL++G  PT  +L+  +
Sbjct: 86373 LNDKEIFSKLSKGAFPTADDLISSL 86299


>gb|CM000606.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 2, whole genome shotgun
              sequence
          Length = 1497954

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 64     QVQQLVRTRFPGVEVHGTTYPLPAWKRPLVTAAR 97
              + Q  V T     E HGT  P+PAW  P   A +
Sbjct: 140997 EAQVPVATEQRNEETHGTLQPVPAWVAPSSAAPK 141098


>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
              sequence
          Length = 2535400

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 123    AWYTQNVASNRPGAVMGVWFVGNMLITNLQNTGAFEI--YFDGQLIFSKLAEGRMPTMA 179
              +W  +  A +RPG    VW    M I  ++ + +F I  Y    ++   + E RMP  A
Sbjct: 566512 SWVMRRPADSRPGEKPNVW--STMTIKEIKVSESFMIDKYI*SMIVCKDINENRMPMRA 566342



 Score = 26.9 bits (58), Expect = 9.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 74     PGVEVHGTTYPLPAWKRPLVTAARSIQMTALAFCI 108
              PG       +PLP W+RP  T  R      L F I
Sbjct: 663877 PGSVRCPVVWPLPLWRRPDTTVRRIFSFPILEFSI 663981


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.322    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,037,383
Number of Sequences: 31
Number of extensions: 84965
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 53
length of query: 241
length of database: 7,911,228
effective HSP length: 95
effective length of query: 146
effective length of database: 7,908,283
effective search space: 1154609318
effective search space used: 1154609318
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)