TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376603.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    31   0.16 
gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    29   0.80 
gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    28   1.4  
gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    28   1.4  
gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   3.1  
gb|GL376619.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   3.1  
gb|GL376628.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    27   4.0  
gb|GL376604.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   5.2  
gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   5.2  
gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   6.8  
gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   6.8  
gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    26   6.8  
gb|GL376592.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    25   8.9  

>gb|GL376603.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582006,
              whole genome shotgun sequence
          Length = 1270039

 Score = 31.2 bits (69), Expect = 0.16
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +2

Query: 20     RERGIQPEHRRTWQFR---GTIPQNPHLAPRFRPNVNDRYQIRR-GRGG 64
              RER  +   RR  Q R   G   +  HLA   RP V+ R+Q+RR GRGG
Sbjct: 464507 RERPQRHVGRRALQDRAR*GQDVRRRHLAVEARPGVDPRHQVRRCGRGG 464653


>gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582039,
             whole genome shotgun sequence
          Length = 1829366

 Score = 28.9 bits (63), Expect = 0.80
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
 Frame = +3

Query: 18    ADRERGIQPEHRRTWQFRGTIPQNPHLA---------PRFRPNVNDRYQIRRG 61
             A++    QP+HRR  Q R  + Q PH A         P  R +V+   + +RG
Sbjct: 98727 AEKTHARQPQHRRDTQAREEVQQQPHNAQHQVLGVARPDIRAHVHTEDRDKRG 98885



 Score = 25.4 bits (54), Expect = 8.9
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -1

Query: 23     GIQPEHRRTWQ-FRGTIPQNPHLAPRFRPNVNDRYQIRRGRGGXC 66
              G +P HR      RGT P++    PR R     R + R  R G C
Sbjct: 185474 GSRPRHRGAASGARGTAPRSA*RRPRPRARARPRPRPRAPRAGTC 185340


>gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582034,
               whole genome shotgun sequence
          Length = 1169325

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 26      PEHRRTWQFRGTIPQNPHLAPR 47
               P   RTW +R T P++PH A R
Sbjct: 1028789 PRSPRTWPWRTTTPRHPHCALR 1028854


>gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020,
              whole genome shotgun sequence
          Length = 790859

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 20     RERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIR 59
              R R  +P  + +W  R T  + PH   RFRP+   R ++R
Sbjct: 613334 RRRRTRPRSKSSWSLRRTTLK-PHQRVRFRPSEPPRARVR 613450


>gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582041,
              whole genome shotgun sequence
          Length = 1261388

 Score = 26.9 bits (58), Expect = 3.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 17     AADRERGIQPEHRRTWQFRGTIPQNPHLAPR 47
              A +R RG+ P  R   ++R   P +PHL  R
Sbjct: 658290 AHERPRGVAPTRRAPRRYRQRGPADPHLQTR 658382


>gb|GL376619.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582022,
              whole genome shotgun sequence
          Length = 784545

 Score = 26.9 bits (58), Expect = 3.1
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 22     RGIQPEHRR--TWQFRGTIPQNPHLAPRFRPNVND 54
              R   P  RR  T   RGT P+ P +APR RP+  D
Sbjct: 674372 RARAPWRRRP*TRSSRGTAPRWPRVAPRARPHPPD 674476



 Score = 25.8 bits (55), Expect = 6.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 26     PEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62
              P H      RGT+PQ  HL    R    +R + R+GR
Sbjct: 307417 PAHAPRSANRGTVPQTQHLP---RETCKERKRTRQGR 307518


>gb|GL376628.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582031,
               whole genome shotgun sequence
          Length = 1316296

 Score = 26.6 bits (57), Expect = 4.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +2

Query: 17      AADRERGIQPEHRR--TWQFRGTI---PQNPHLAP 46
               A D ++ +  EHRR  T +  G I   P NPHL P
Sbjct: 1216466 ALDAQQQLNSEHRRLATVELHGLIGLEPSNPHLEP 1216570


>gb|GL376604.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582007,
              whole genome shotgun sequence
          Length = 931704

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 30     RTWQFRGTIPQNPHLAPRFRPNVNDRYQIR 59
              R W     I Q P LAPR RP       +R
Sbjct: 215748 RPWPRPDMIVQRPQLAPRLRPPTRSHQTLR 215659



 Score = 25.4 bits (54), Expect = 8.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -3

Query: 22     RGIQPEHRRTWQFRGTIPQ----NPHLAPRFRPNVNDRYQIR 59
              R  +   RR  + R  +P     NP  APR  P+ +DR Q+R
Sbjct: 880168 RADRSARRRGRRDRRAVPHGGRANPRAAPRCDPSGHDRAQVR 880043


>gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581242,
              whole genome shotgun sequence
          Length = 870537

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 24     IQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGGXC 66
              + P HR+      +IP  P  +  FRP+    Y  RRGR   C
Sbjct: 836351 LHPCHRQCRNAPCSIPSRPLCSTWFRPSTQRPY--RRGRRSSC 836473


>gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582023,
               whole genome shotgun sequence
          Length = 1683196

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 19      DRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIR 59
               DR+R +    +RTW+F        H A  FR      YQ+R
Sbjct: 1375646 DRDRSLPESFKRTWEF-----YLLHSAACFRAQALQVYQVR 1375539



 Score = 25.4 bits (54), Expect = 8.9
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
 Frame = -2

Query: 20     RERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNV--------NDRYQIRRGRGGXC 66
              R   I P H   W+   T     H + RFRP          +  +  RRGR   C
Sbjct: 727743 RTARILPAHGERWRDGSTNTGRGHTSARFRPGAAALRSGSWSRAWSCRRGRHDGC 727579


>gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581789,
              whole genome shotgun sequence
          Length = 837833

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 22     RGIQPEHRRTWQFRGTIPQNPHLAPRF 48
              RG +PE   TW  R ++P      P F
Sbjct: 639165 RGDRPERLTTWSVRSSLPSGSAADPNF 639085


>gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581354,
              whole genome shotgun sequence
          Length = 1199448

 Score = 25.8 bits (55), Expect = 6.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 38     IPQNPHLAPRFRPN 51
              IP+NP  +PRF+PN
Sbjct: 994885 IPRNPKHSPRFKPN 994844



 Score = 25.4 bits (54), Expect = 8.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 19     DRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRR 60
              DR+R   PEHRR      ++P++     R R     R Q RR
Sbjct: 651501 DRDRRYSPEHRRD----RSMPRSSRADERSRGRSRSRSQTRR 651388


>gb|GL376592.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581880,
              whole genome shotgun sequence
          Length = 568974

 Score = 25.4 bits (54), Expect = 8.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 21     ERGIQPEHRRTWQFRGTIPQNPHLA 45
              ERG++ EHRR  Q    +P+  H A
Sbjct: 435380 ERGLKREHRRHKQLHQKLPRRRHHA 435306


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,334,035
Number of Sequences: 82
Number of extensions: 42676
Number of successful extensions: 439
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 96
length of query: 66
length of database: 14,267,206
effective HSP length: 41
effective length of query: 25
effective length of database: 14,263,844
effective search space: 356596100
effective search space used: 356596100
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)