TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelQ_toxoplasma_gondii_gladyshev # QUERY (66 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 30 0.20 gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 26 2.9 gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 26 2.9 gb|CM000633.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 6.4 gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 6.4 gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 6.4 gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 8.4 gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 8.4 gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 25 8.4 >gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun sequence Length = 2535400 Score = 30.0 bits (66), Expect = 0.20 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 25 QPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62 +P RR W + NPHL FRP ++Y++R+ R Sbjct: 1734377 RPLLRRFWPVTSSDDTNPHLV--FRPREKEKYKLRKKR 1734270 >gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun sequence Length = 829358 Score = 26.2 bits (56), Expect = 2.9 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +1 Query: 22 RGIQPEHRRTWQFRGTIPQNPHLAPRFRP 50 R +P HRR Q R P NP PR P Sbjct: 387004 RPCRPNHRRHRQSRYRPPMNPPQLPRIYP 387090 Score = 25.8 bits (55), Expect = 3.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 24 IQPEHRRTWQFRGTIPQNPHLAPRFRPNV 52 I+P+H R F T+P PH PR P V Sbjct: 317216 IRPDHARV--FTVTLPVEPHPNPRSTPPV 317296 Score = 25.0 bits (53), Expect = 6.4 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -1 Query: 23 GIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 G++PE R W++ I P R P + R+ RR + G Sbjct: 70142 GLRPECVRDWEYADGIRDEP---CRGHPGIAGRWSWRRDKAG 70026 >gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun sequence Length = 1007773 Score = 26.2 bits (56), Expect = 2.9 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -2 Query: 24 IQPEHRRTWQFRGTIPQNPHLAPRFRPNVN--DRYQIRRGRG 63 +Q H TW R P+NP FR ++ DR+ R RG Sbjct: 158391 VQLGHADTWARRKPSPKNPRRPYHFRIGMDTYDRHCCSRSRG 158266 Score = 25.4 bits (54), Expect = 4.9 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = +2 Query: 29 RRTWQFRGTIPQNP 42 RR W FRG PQ P Sbjct: 510473 RRWWPFRGAFPQRP 510514 >gb|CM000633.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 31, whole genome shotgun sequence Length = 258242 Score = 25.0 bits (53), Expect = 6.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 25 QPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRR 60 +P R QFR + QNP + F + D YQ++R Sbjct: 123325 KPHVRAQDQFRPKL-QNPQILTLFGSKIRDGYQMKR 123429 >gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 9, whole genome shotgun sequence Length = 1002813 Score = 25.0 bits (53), Expect = 6.4 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -3 Query: 30 RTWQFRGTIPQNPHLAPRFRPNVNDRYQIRR 60 R Q G IP N H +PR R +V+ RY I R Sbjct: 826033 RHCQSTGNIP-NTHPSPRSRQDVSYRYLIGR 825944 >gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 7, whole genome shotgun sequence Length = 1029019 Score = 25.0 bits (53), Expect = 6.4 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -1 Query: 22 RGIQPEHRRTWQFRGTIPQNPHLAPRFR 49 R QP RR ++ R ++PH+ RFR Sbjct: 334660 RFCQPSRRRAFR*RPKFGEHPHVGLRFR 334577 >gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 21, whole genome shotgun sequence Length = 662217 Score = 24.6 bits (52), Expect = 8.4 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = -2 Query: 19 DRERGIQPEHRRTWQFRGTIPQNPHLAP 46 D R Q HRR F + Q PHL P Sbjct: 95543 DTRRKRQELHRRLCLFARRLAQQPHLPP 95460 >gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 12, whole genome shotgun sequence Length = 901853 Score = 24.6 bits (52), Expect = 8.4 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -2 Query: 30 RTWQFRGTIPQNPHLAP-RFRPNVNDRYQIRR 60 R++Q+R T+P+ P P R P R +RR Sbjct: 559381 RSYQYRSTVPEYPQTWPSRIHPESAMRPLVRR 559286 >gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun sequence Length = 1035082 Score = 24.6 bits (52), Expect = 8.4 Identities = 8/37 (21%), Positives = 19/37 (51%) Frame = +3 Query: 21 ERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQ 57 +RG + + W +PQ P +P+++D+++ Sbjct: 649068 DRGNRSPVKEYWDAESKVPQRPEAHTVDKPHISDKWE 649178 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.326 0.143 0.484 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,820,365 Number of Sequences: 31 Number of extensions: 25224 Number of successful extensions: 245 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 213 Number of HSP's gapped (non-prelim): 110 length of query: 66 length of database: 7,911,228 effective HSP length: 41 effective length of query: 25 effective length of database: 7,909,957 effective search space: 197748925 effective search space used: 197748925 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 51 (24.3 bits)