TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000495.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   0.25 
gb|ABWE01000041.1| Hyaloperonospora parasitica strain Emoy2 v-7....    29   0.96 
gb|ABWE01000121.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   2.1  
gb|ABWE01000691.1| Hyaloperonospora parasitica strain Emoy2 v-7....    26   8.1  
gb|ABWE01000026.1| Hyaloperonospora parasitica strain Emoy2 v-7....    26   8.1  

>gb|ABWE01000495.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont3.44, whole genome
             shotgun sequence
          Length = 38972

 Score = 31.2 bits (69), Expect = 0.25
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 17    AADRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62
             AA R+R  +P  RR W        NPH    FRP   +RY++R+ R
Sbjct: 24928 AAKRQRLRRPLLRRFWPQTPLNDTNPHSV--FRPREKERYKLRKHR 25059


>gb|ABWE01000041.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont52.1, whole genome
             shotgun sequence
          Length = 110130

 Score = 29.3 bits (64), Expect = 0.96
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 24    IQPEHRRTWQFRGTIPQNPHLAPRFRPNVN 53
             + P+HR  W+F  T+P+     P+ RP+ N
Sbjct: 25372 LHPDHRTAWKF-ATVPRRVWCVPKRRPHCN 25286


>gb|ABWE01000121.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont123.3, whole
             genome shotgun sequence
          Length = 76809

 Score = 28.1 bits (61), Expect = 2.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 24    IQPEHRRTWQFRGTIPQNPHLAPRFRPNVND 54
             + P+HR  W+F  T+P+     P+ RP+ ++
Sbjct: 73683 LHPDHRTAWKF-ATVPRRVWCVPKRRPHCHE 73594


>gb|ABWE01000691.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont163.7, whole
             genome shotgun sequence
          Length = 31404

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 30    RTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62
             R+WQ    + Q+ H  PR RP+   + Q+  GR
Sbjct: 16056 RSWQILPDLQQHSHTGPRLRPS---QMQLLTGR 15967


>gb|ABWE01000026.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont12.3, whole genome
             shotgun sequence
          Length = 120320

 Score = 26.2 bits (56), Expect = 8.1
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
 Frame = +3

Query: 27    EHRRTW----QFRGTIPQNPHLAPRFR 49
             + RR W    + RGT P NP L PR R
Sbjct: 68139 QSRRNWPRAFR*RGTRPSNPWLTPRLR 68219


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,637,528
Number of Sequences: 5422
Number of extensions: 53469
Number of successful extensions: 477
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of query: 66
length of database: 22,486,378
effective HSP length: 41
effective length of query: 25
effective length of database: 22,264,076
effective search space: 556601900
effective search space used: 556601900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)