TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelQ_toxoplasma_gondii_gladyshev # QUERY (66 letters) Database: E.siliculosus/genome.fa 35 sequences; 195,934,119 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 2.2 emb|FN649746.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 2.2 emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genom... 29 2.8 emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genom... 29 3.7 emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genom... 29 3.7 emb|FN649738.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 8.2 emb|FN649744.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 8.2 emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 8.2 emb|FN649755.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 8.2 emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 8.2 >emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG04 Length = 5529539 Score = 29.6 bits (65), Expect = 2.2 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -2 Query: 26 PEHRRTWQFRGTIPQNPHLAPRFR-PNVNDRYQIRRGRG 63 P RR +F+G P+ L R+R P V DR++ R RG Sbjct: 4957573 PRLRRAGKFQGPRPRQTRLRRRYRLPGVRDRHRHGRRRG 4957457 >emb|FN649746.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG21 Length = 3571976 Score = 29.6 bits (65), Expect = 2.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 40 QNPHLAPRFRPNVNDRYQIRRGRGG 64 QNP L PR RP + R + RGG Sbjct: 2697771 QNPRLRPRLRPRLRPRLHLSPARGG 2697845 >emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG16 Length = 8064047 Score = 29.3 bits (64), Expect = 2.8 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 28 HRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRG 61 HR T+ RGT+ Q R +NDRY + RG Sbjct: 667491 HRLTYPKRGTLKQTGPERVRKSIKINDRYSLERG 667592 Score = 28.9 bits (63), Expect = 3.7 Identities = 10/30 (33%), Positives = 13/30 (43%) Frame = +2 Query: 27 EHRRTWQFRGTIPQNPHLAPRFRPNVNDRY 56 + RR W FR PH P F P + + Sbjct: 7517420 QERRRWSFRHVATNTPHTTPGFEPTASQAH 7517509 >emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG15 Length = 5788546 Score = 28.9 bits (63), Expect = 3.7 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = +1 Query: 28 HRRTWQFRGTIP---QNPHLAPRFRPNVNDRYQIRRGR 62 HRRT F GT+P Q H+ R R N++ R GR Sbjct: 3988561 HRRTDTFEGTVP*FRQVEHVVVRCRLNMSTRLATSHGR 3988674 >emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG31 Length = 577967 Score = 28.9 bits (63), Expect = 3.7 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 45 APRFRPNVNDRYQIRRGRGGXC 66 APR++ + RY RGRGG C Sbjct: 133296 APRYKTDEAHRYSTNRGRGGVC 133231 >emb|FN649738.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG13 Length = 3173470 Score = 27.7 bits (60), Expect = 8.2 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = +2 Query: 17 AADRERGIQPEHRRTWQFRGT--IPQNPHLAPRFRPNVNDR 55 AA R R + RRT+ RGT P+ P PRF N R Sbjct: 1035065 AASRSRMTRSPERRTFPDRGTARTPRPPSTPPRFSALANGR 1035187 >emb|FN649744.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG19 Length = 3025835 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = -3 Query: 22 RGIQPEHRRTWQFRGTIPQNPH---LAPRFRPNVN 53 R P+HR T + PQ PH L PR++ +V+ Sbjct: 2424534 RSYHPQHRHTRPWNQRTPQKPHDYPLPPRYKLDVS 2424430 >emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG23 Length = 3983565 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 28 HRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGGXC 66 H R +P+N +L PR + +Y+ + GRGG C Sbjct: 856266 HVRRQNLLPALPRNVYLPPRSMTHA--KYRYKEGRGGSC 856376 >emb|FN649755.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG30 Length = 4005922 Score = 27.7 bits (60), Expect = 8.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 26 PEHRRTWQFRGTIPQNP 42 P+ RR W++ GTIPQ P Sbjct: 988363 PQ*RRLWRYCGTIPQTP 988413 >emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, unassigned sequences LGUn Length = 58155991 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 28 HRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGGXC 66 H R +P+N +L PR + +Y+ + GRGG C Sbjct: 58083259 HVRRQNLLPALPRNVYLPPRSMTHA--KYRYKEGRGGSC 58083149 Database: E.siliculosus/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 195,934,119 Number of sequences in database: 35 Lambda K H 0.326 0.143 0.484 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,619,026 Number of Sequences: 35 Number of extensions: 259063 Number of successful extensions: 2802 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 2547 Number of HSP's gapped (non-prelim): 1084 length of query: 66 length of database: 65,311,373 effective HSP length: 41 effective length of query: 25 effective length of database: 65,309,938 effective search space: 1632748450 effective search space used: 1632748450 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 59 (27.3 bits)