TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    23   7.2  
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    23   7.2  

>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun
              sequence
          Length = 1344712

 Score = 23.5 bits (49), Expect = 7.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 20     RERGIQPEHRRTWQFRGT 37
              RERG++PE RR+ ++  T
Sbjct: 818669 RERGVEPELRRSRRYSHT 818616



 Score = 23.1 bits (48), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 37     TIPQNPHLAPRFRPNVNDRYQI 58
              TIP+N    PR+   +N +YQ+
Sbjct: 901253 TIPRNFGAMPRYIQ*INSKYQV 901318


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 23.5 bits (49), Expect = 7.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 26     PEHRRTWQFRGTIPQN 41
              PEHR  W F G I  N
Sbjct: 536742 PEHRFVWSFYGYIKAN 536789


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,734
Number of Sequences: 8
Number of extensions: 3079
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 8
length of query: 66
length of database: 3,034,108
effective HSP length: 41
effective length of query: 25
effective length of database: 3,033,780
effective search space: 75844500
effective search space used: 75844500
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)