TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelQ_toxoplasma_gondii_gladyshev # QUERY (66 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 31 0.11 supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 26 3.4 supercontig_1.12 of Capsaspora owczarzaki ATCC 30864 26 4.5 supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 25 7.6 supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 25 7.6 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 31.2 bits (69), Expect = 0.11 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%) Frame = +3 Query: 19 DRERGIQPEH-------RRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62 DRE+ P H R W T +N H ++P VN+R++ RGR Sbjct: 1141281 DREQETSPHHPPRHCWSRHHWHLEATCSENRH----WQPGVNERHRCPRGR 1141421 Score = 28.1 bits (61), Expect = 0.90 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 22 RGIQPEHRRTWQFRGTIPQNPHLAPRFRP 50 R + P H R WQFR P++ H PR P Sbjct: 2560452 RPLHPPHSRRWQFRQPHPRHHH-QPRHPP 2560535 >supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 Length = 1292811 Score = 26.2 bits (56), Expect = 3.4 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -3 Query: 19 DRERGIQPEHRRTWQFR-GTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 +RER + E RTW+ R I Q R R +DR R+ +GG Sbjct: 406807 ERERERERERERTWESR*SKIKQKSRKKKRLRS--SDRQGCRKWKGG 406673 Score = 24.6 bits (52), Expect = 9.9 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%) Frame = +3 Query: 19 DRER-GIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRG 61 DR R G + H W + G P PH RPN +RRG Sbjct: 282288 DRNRHGPRSSHLGWWWWWGAHPGCPHARSHTRPNA----MLRRG 282407 >supercontig_1.12 of Capsaspora owczarzaki ATCC 30864 Length = 1052152 Score = 25.8 bits (55), Expect = 4.5 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +3 Query: 20 RERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVND 54 R R P W +R P++PHL RP+ D Sbjct: 787893 RRRDAHPSTWAGWLWRNLFPRSPHLYGLPRPSRKD 787997 Score = 25.4 bits (54), Expect = 5.8 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -2 Query: 21 ERGIQPEHRRTWQFRGTIPQNPH 43 ERG P+ ++TWQ +P++ H Sbjct: 709122 ERGSLPQTKQTWQHYAFLPRHYH 709054 >supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 Length = 1380613 Score = 25.0 bits (53), Expect = 7.6 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -3 Query: 21 ERGIQPEHRRTWQFRGTIPQNPHL 44 ERG +P W+ R T+ +N HL Sbjct: 629420 ERGTKPRRIGLWRDRPTLTKNQHL 629349 Score = 24.6 bits (52), Expect = 9.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 28 HRRTWQFRGTIPQNPHLAPRFRPN 51 HRR W FR +P LA + P+ Sbjct: 660480 HRRVWPFRQHLPMRTALAIQRNPS 660551 >supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 Length = 2526540 Score = 25.0 bits (53), Expect = 7.6 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Frame = -1 Query: 21 ERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDR------YQIRRGRGGXC 66 +R + +H + WQ R + P RFR R Y++RR G C Sbjct: 1469730 QRCVPVQHHQGWQGRCAMDDRPQERRRFRHQGRRRRARLHHYRLRRRLCGPC 1469575 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.326 0.143 0.484 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,336,324 Number of Sequences: 89 Number of extensions: 32276 Number of successful extensions: 344 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 314 Number of HSP's gapped (non-prelim): 87 length of query: 66 length of database: 9,347,932 effective HSP length: 41 effective length of query: 25 effective length of database: 9,344,283 effective search space: 233607075 effective search space used: 233607075 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (24.6 bits)