TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelQ_toxoplasma_gondii_gladyshev # QUERY (66 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp... 27 1.2 dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl... 26 2.0 dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, comp... 25 3.4 dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp... 25 3.4 dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, compl... 25 5.9 dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl... 24 7.7 dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, compl... 24 7.7 dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp... 24 7.7 dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 24 7.7 dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 24 7.7 >dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete sequence Length = 839707 Score = 26.9 bits (58), Expect = 1.2 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +3 Query: 18 ADRERGIQPEHRRTWQFRG 36 AD RG+ P R TW+F G Sbjct: 683772 ADLARGVYPNCRNTWRFHG 683828 Score = 24.6 bits (52), Expect = 5.9 Identities = 11/41 (26%), Positives = 18/41 (43%) Frame = +2 Query: 26 PEHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGGXC 66 P TWQ + I ++P R + +++ R GG C Sbjct: 420605 PAGAATWQHKRAIAKHPCTRVAVRGSASEQQSPPRAHGGGC 420727 >dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete sequence Length = 739753 Score = 26.2 bits (56), Expect = 2.0 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 21 ERGIQPEHRRTWQFRGTIPQNPHLAPRFRP 50 +R ++ HRR W+ RG Q PH R RP Sbjct: 169638 QRPMRAGHRRRWRCRGRRCQQPH-RQRCRP 169552 >dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, complete genome, complete sequence Length = 852849 Score = 25.4 bits (54), Expect = 3.4 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = -2 Query: 30 RTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRG 63 RTW R T PQ+P L R R + R G Sbjct: 484364 RTWGERATYPQDPPLTDRGRRQARELGVFLRSAG 484263 Score = 25.0 bits (53), Expect = 4.5 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -2 Query: 27 EHRRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRG 63 +HRR+W++RG P A R NV + IR G Sbjct: 213731 QHRRSWRYRG----RPQHALGAR*NVRNDQYIREKMG 213633 Score = 25.0 bits (53), Expect = 4.5 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = +2 Query: 19 DRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVNDRY 56 +R RG P T +PQ PRFRP +N Y Sbjct: 677102 ERVRGFVPIQSGT---HANVPQTRRDMPRFRPALNAAY 677206 >dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete sequence Length = 1282939 Score = 25.4 bits (54), Expect = 3.4 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -3 Query: 20 RERGIQPEHRRTWQFRGTIPQNPHLAPRFR 49 R +Q HRR W+ G +PQ H R + Sbjct: 308018 RSVSVQRLHRRYWRHCGRMPQARHTIGRMK 307929 Score = 24.3 bits (51), Expect = 7.7 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -1 Query: 28 HRRTWQFRGTIPQNPHLA 45 HRR W RG++ +N LA Sbjct: 539170 HRRYWHVRGSLRKNVRLA 539117 >dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, complete genome, complete sequence Length = 513455 Score = 24.6 bits (52), Expect = 5.9 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Frame = -3 Query: 25 QPEHRR-TWQFRGTIPQNPHLAPRFRP 50 +P H R TW R + L PRFRP Sbjct: 234522 EPSHLRFTWDTRTNTNKVKELPPRFRP 234442 >dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete sequence Length = 481791 Score = 24.3 bits (51), Expect = 7.7 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = +3 Query: 21 ERGIQPEHRRTWQFRGTIPQNPH 43 E GI + RR+W F+G+ + H Sbjct: 297384 EEGIFLQRRRSWGFQGSFGRGKH 297452 >dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, complete genome, complete sequence Length = 536163 Score = 24.3 bits (51), Expect = 7.7 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +2 Query: 26 PEHRRTWQFRGTIPQNPHLAPRFRPNV 52 P RR+W G++P P + R RP++ Sbjct: 169925 PTSRRSWWSFGSLPLLPPASSRGRPSL 170005 >dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete sequence Length = 902900 Score = 24.3 bits (51), Expect = 7.7 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 32 WQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 W +R T PQ+ +A + P R +I R R G Sbjct: 47795 WTYRST*PQSSVIARKGAPGRIQR*RIERARRG 47893 Score = 24.3 bits (51), Expect = 7.7 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +3 Query: 32 WQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGG 64 W +R T PQ+ +A + P R +I R R G Sbjct: 56988 WTYRST*PQSSVIARKGAPGRIQR*RIERARRG 57086 >dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete sequence Length = 1253087 Score = 24.3 bits (51), Expect = 7.7 Identities = 9/23 (39%), Positives = 12/23 (52%) Frame = +2 Query: 30 RTWQFRGTIPQNPHLAPRFRPNV 52 R W +P NPH R +P+V Sbjct: 1150253 RCWDGTRQVPVNPHRPSRLQPSV 1150321 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 24.3 bits (51), Expect = 7.7 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -2 Query: 34 FRGTIPQNPHLAPRFRP 50 +RG P+N HLAP P Sbjct: 1135106 WRGQFPENAHLAPGAHP 1135056 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.326 0.143 0.484 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,357,098 Number of Sequences: 20 Number of extensions: 18634 Number of successful extensions: 190 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 153 Number of HSP's gapped (non-prelim): 83 length of query: 66 length of database: 5,515,582 effective HSP length: 41 effective length of query: 25 effective length of database: 5,514,762 effective search space: 137869050 effective search space used: 137869050 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.9 bits)