TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668683.1| Blastocystis hominis, Singapore isolate B (sub-t...    29   0.35 
emb|FN668648.1| Blastocystis hominis, Singapore isolate B (sub-t...    27   1.3  
emb|FN668691.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   3.9  
emb|FN668643.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   6.7  
emb|FN668650.1| Blastocystis hominis, Singapore isolate B (sub-t...    24   8.7  
emb|FN668654.1| Blastocystis hominis, Singapore isolate B (sub-t...    24   8.7  
emb|FN668661.1| Blastocystis hominis, Singapore isolate B (sub-t...    24   8.7  
emb|FN668688.1| Blastocystis hominis, Singapore isolate B (sub-t...    24   8.7  

>emb|FN668683.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_5
          Length = 953317

 Score = 28.9 bits (63), Expect = 0.35
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 29     RRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRG 63
              ++T Q +   P  PH  PR R N  +R ++RR RG
Sbjct: 536354 QQTHQHQRQQPFRPHAQPRRRQNRGNRAEVRRLRG 536250


>emb|FN668648.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_18
          Length = 370504

 Score = 26.9 bits (58), Expect = 1.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 18     ADRERGIQPEHRRTWQFRGTIPQNPHLAPRFRPNVND 54
              A R R ++  HRR    R    + PH+ PRF  + +D
Sbjct: 137272 ASRLRALRGTHRRAETRRAPQARQPHVLPRFHFSSSD 137382


>emb|FN668691.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_9
          Length = 642864

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 29     RRTWQFRGTIPQNPHLAPRFRPNVNDRYQIRRGR 62
              RR W  R   P  P   PR++P    R   RR R
Sbjct: 523479 RRLWMCRRWKPWKPRRKPRWKPKPRWRSLARRRR 523580


>emb|FN668643.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_13
          Length = 486799

 Score = 24.6 bits (52), Expect = 6.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 26     PEHRRTWQFRGTIPQNPHLAPRFRP 50
              P+HR     R +  Q  H A RFRP
Sbjct: 162195 PDHRAHQTHRQSASQQAHPAQRFRP 162269


>emb|FN668650.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome shotgun
               sequence assembly, scaffold_2
          Length = 1458350

 Score = 24.3 bits (51), Expect = 8.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 38      IPQNPHLAPRFRPNVNDRYQIRRGR 62
               + Q P LAPR RP   +  Q  RGR
Sbjct: 1177565 VAQRPALAPRRRPLREEALQPPRGR 1177491


>emb|FN668654.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_23
          Length = 240939

 Score = 24.3 bits (51), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 23     GIQPEHRRTWQFRGTIPQ 40
              G+   HR  W+ +G++PQ
Sbjct: 141612 GVHQNHRNYWRSQGSLPQ 141665


>emb|FN668661.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome shotgun
               sequence assembly, scaffold_3
          Length = 1354787

 Score = 24.3 bits (51), Expect = 8.7
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +3

Query: 27      EHRRT----WQFRGTIPQNPHLAPRFRPNVNDRYQIRRGRGGXC 66
               +HR T     Q+R  +P       R RP  N   +IRR   G C
Sbjct: 1028007 DHRHTRRLALQYRSKVPHTSRA--RLRPFANFEKRIRRSHCGDC 1028132


>emb|FN668688.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_6
          Length = 900598

 Score = 24.3 bits (51), Expect = 8.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 21     ERGIQPEHRRTWQFRGTIPQNPHLAPRF 48
              ERG+  + +  W  +G  P +PH  P++
Sbjct: 646734 ERGVCLQRQGVWLCKGGKPISPHY*PKY 646651


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,311,902
Number of Sequences: 54
Number of extensions: 16480
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 29
length of query: 66
length of database: 6,272,415
effective HSP length: 41
effective length of query: 25
effective length of database: 6,270,201
effective search space: 156755025
effective search space used: 156755025
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)