TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 37 0.008 gb|GL349434.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 31 0.41 gb|GL349436.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 30 0.70 gb|GL349446.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 30 1.2 gb|GL349505.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 29 1.6 gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 4.6 gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 4.6 gb|GL349449.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 6.0 gb|GL349448.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 7.8 gb|GL349443.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 7.8 >gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.18, whole genome shotgun sequence Length = 527020 Score = 37.0 bits (84), Expect = 0.008 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = -3 Query: 119 ALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYE 175 ALH V + ++ A+ + G S G+ +G GA GL IP SW QRY+ Sbjct: 248036 ALHCVHSTASFEAALLKVANLRGDADSVGAVVGQLAGAFYGLAAIPPSWIEAVQRYD 247866 >gb|GL349434.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.2, whole genome shotgun sequence Length = 680870 Score = 31.2 bits (69), Expect = 0.41 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%) Frame = +2 Query: 139 CGG-------CTCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 CGG C C G GACLGA+VG+ G+ + RT R Sbjct: 118424 CGGLDQVGNACVCGGGRHGGACLGARVGI-GVARCAAERTIR 118546 >gb|GL349436.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.4, whole genome shotgun sequence Length = 664084 Score = 30.4 bits (67), Expect = 0.70 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 2/95 (2%) Frame = -1 Query: 81 QAVVGHIHQVKENLSKTPQELIPAVFVNTXGLPGAFQAALHGVLTATNYVQAVRDTMSCG 140 +A + NL + P+ +V GA A T+ + + +CG Sbjct: 312661 EATAARVRATMRNLRRGPRPGCGSVGRAAGDTAGAISAESLSSQTSRSLASVTINDSACG 312482 Query: 141 GCTCSRG-SFIGACLGAQVGLEGI-PASWSSRTQR 173 C C G G+C A G + P +W R +R Sbjct: 312481 SCACCGGRKCRGSCPCAACGFQQTSPCTWRPRCER 312377 Score = 27.3 bits (59), Expect = 6.0 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = +2 Query: 14 YAGKPEMLGRVEDA--VRVTQNNDACVAETLAAARFLEHFILNGPDPTALESVIRQLRDP 71 +AG + +GRV+ A +++ Q CV N T + +Q+R Sbjct: 483791 FAGSEKHVGRVDIACNIKLEQIEPQCVVGC------------NASQDTTRSASPQQVR-- 483928 Query: 72 NRKQAQDLDQAVVGHIHQVKENLSKTPQELIPA 104 N + AQD Q +VGH+ Q +E T ++L A Sbjct: 483929 NIEPAQDRKQQLVGHVQQ-RERA*STVRDLTAA 484024 >gb|GL349446.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.14, whole genome shotgun sequence Length = 557936 Score = 29.6 bits (65), Expect = 1.2 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = +3 Query: 123 VLTATNYVQAVRDTMSCG----GCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYES 176 +L+AT + R C CT S S G CLG++ G + WSSR+ + S Sbjct: 421539 ILSATRCTRCCRSDRVCSPRVSSCTFST-SKTGPCLGSRSGFSSSFSFWSSRSSPFTS 421709 Score = 28.1 bits (61), Expect = 3.5 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = -2 Query: 123 VLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGA--QVGLEGIPASWSSRTQR 173 V TAT+ V A + +CGG + G GAC A + + P+S SR++R Sbjct: 242893 VRTATSSVAAAANGATCGGAA-NGGGASGACTCALTVIDVHACPSSHPSRSRR 242738 Score = 27.7 bits (60), Expect = 4.6 Identities = 16/51 (31%), Positives = 20/51 (39%) Frame = +3 Query: 131 QAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHA 181 +A+ D CGGC +G CL Q G + W QR V A Sbjct: 545913 RALWDRRRCGGCRWWLVCGLGCCLSRQHRRRGRRSCWGPGWQRQAHVYRRA 546065 >gb|GL349505.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.73, whole genome shotgun sequence Length = 103195 Score = 29.3 bits (64), Expect = 1.6 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGI 163 CGG RG +G C+G + G EG+ Sbjct: 8677 CGGEGVMRGVLVGVCMGTKGGWEGV 8603 Score = 26.9 bits (58), Expect = 7.8 Identities = 11/37 (29%), Positives = 18/37 (48%) Frame = -1 Query: 134 RDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSR 170 R T C C+ S + + G EG+P +WS++ Sbjct: 62422 RQTACGSSCACACASCVCVVRVRERGREGVPVTWSAQ 62312 >gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.7, whole genome shotgun sequence Length = 618594 Score = 27.7 bits (60), Expect = 4.6 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = +1 Query: 66 RQLRDPNRKQAQ--DLDQAVVGHIHQVKENLSKTPQELIP 103 ++LRD +RK + DL+ A + IH+V EN+++ P L+P Sbjct: 424756 QRLRDNSRKSLRVADLELARLD-IHRVGENVAELPHRLLP 424872 >gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.5, whole genome shotgun sequence Length = 654703 Score = 27.7 bits (60), Expect = 4.6 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = +1 Query: 120 LHG---VLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPA 165 +HG VL +Y + T+ GG +GA LGA+ G +P+ Sbjct: 109432 VHGLRLVLDGASYADGLASTLLLGGDAAVNAPIVGALLGARWGGYALPS 109578 >gb|GL349449.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.17, whole genome shotgun sequence Length = 533784 Score = 27.3 bits (59), Expect = 6.0 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +2 Query: 45 ARFLEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHIH 88 AR H P P A+ V R L+DP +Q LD + +H Sbjct: 435938 ARGHPHLSQGLPQPAAVLRVPRPLQDPRSRQGPRLDDGLEEGVH 436069 >gb|GL349448.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.16, whole genome shotgun sequence Length = 538444 Score = 26.9 bits (58), Expect = 7.8 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = +1 Query: 70 DPNRKQAQDLDQAVVGHIHQVKENLSKTPQE 100 +P + +D D A V H+H++++ L+ PQ+ Sbjct: 453871 EPELEDERDEDDAKVEHVHELEKVLADGPQQ 453963 >gb|GL349443.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.11, whole genome shotgun sequence Length = 571036 Score = 26.9 bits (58), Expect = 7.8 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 66 RQLRDPNRKQAQDLDQAVVGHIHQV 90 R++RD DL+QA GH+HQ+ Sbjct: 123606 REMRDNMADSTVDLEQANDGHVHQL 123680 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,040,667 Number of Sequences: 131 Number of extensions: 149505 Number of successful extensions: 1191 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 1041 Number of HSP's gapped (non-prelim): 405 length of query: 189 length of database: 9,560,209 effective HSP length: 94 effective length of query: 95 effective length of database: 9,547,895 effective search space: 907050025 effective search space used: 907050025 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.6 bits)