TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743997.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    69   3e-12
gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    32   0.33 
gb|GG743884.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    31   0.95 
gb|GG745184.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    29   3.6  
gb|GG743903.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    29   3.6  
gb|GG743891.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    29   3.6  
gb|GG743899.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    28   4.7  
gb|GG744003.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    28   6.2  
gb|GG743957.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    28   6.2  
gb|GG743895.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    28   8.0  

>gb|GG743997.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.115, whole
              genome shotgun sequence
          Length = 116760

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 50/184 (27%), Positives = 87/184 (47%)
 Frame = -2

Query: 3      GVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTALE 62
              G+ K+  +VA YAGKPE+L  V  AV V Q     +   +A A  LE  ++     ++++
Sbjct: 101822 GLNKVPLLVARYAGKPELLDVVRQAVLVHQTTPLAIDVAIAGAIILEAVVVK---QSSIK 101652

Query: 63     SVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTXGLPGAFQAALHG 122
                I   R   R +A    QA++  +  + + ++ +      A +  +  LPG+FQ+ L  
Sbjct: 101651 DAITAARSDARVEASV--QALIQGV--LDDAVASSDVHAAVAKYGKSCPLPGSFQSGLFV 101484

Query: 123    VLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAK 182
              +LT   YV +V   ++ GG  C R  F+GA   A       P +W  +  R+  +    +
Sbjct: 101483 LLTDGQYVSSVTKNITAGGDNCGRSIFVGAVAAAATD-SPTPDAWQHKMTRFAELHALVE 101307

Query: 183    KITS 186
              K+ +
Sbjct: 101306 KVVA 101295


>gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.1, whole
               genome shotgun sequence
          Length = 1615555

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = -2

Query: 114     GAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEG 162
               G FQ A+H  L A  YV A+R  +      C+   F+G CLG Q   EG
Sbjct: 1100952 GNFQQAMH-FLNANAYVDALRAYI------CANKRFLGICLGMQTLFEG 1100827


>gb|GG743884.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.2, whole
              genome shotgun sequence
          Length = 1567649

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = -1

Query: 18     PEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTALESVIRQLRDPNRKQAQ 77
              P+   +V D  RV  N DA  A  + AA +  HF++N    T++E ++ +  +P+R    
Sbjct: 564866 PQHAPKVHDGARVV-NVDAAAAAAVDAAAW--HFVINVACNTSMEVLVHER*EPHRGFHP 564696

Query: 78     DLDQAVVGHIHQ 89
              +  +AV   + +
Sbjct: 564695 ETQRAVAALLEE 564660


>gb|GG745184.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.1302,
           whole genome shotgun sequence
          Length = 2159

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 134 RDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAK 182
           R T +C GC C+RG       GA V   G P+   S   RY +++ H +
Sbjct: 378 RATSACVGCHCARGD-----RGAVV--VGPPSPHPSHRHRYRAIMTHIR 253


>gb|GG743903.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.21,
            whole genome shotgun sequence
          Length = 505868

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -1

Query: 122  GVLTATNYVQAVRDTMSCGG-CTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH 180
            G L     VQ  R  ++  G CT SRG  + +C  AQ  L    A++++R  R   ++E 
Sbjct: 1556 GDLARHETVQVCRQRVARDGTCTVSRGEGVRSCPAAQKALR---ATYAARALRLVYLVER 1386

Query: 181  AKKITSHL 188
             +  +S+L
Sbjct: 1385 KRIFSSNL 1362


>gb|GG743891.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.9, whole
              genome shotgun sequence
          Length = 812807

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 102    IPAVFVNTXGLPG----AFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQ 157
              +P   V+T  LP     A  +A+HGVL AT+ ++ +    +C   +  R S    C    
Sbjct: 758016 VPTPSVSTLTLPRPC*QAMLSAVHGVLAATHDMRHIVGRSTCVSSSIRRRSNAPPCEETS 758195

Query: 158    VGLEGIPASWSS 169
                 E  P S +S
Sbjct: 758196 CASEPCPGSTTS 758231


>gb|GG743899.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.17, whole
             genome shotgun sequence
          Length = 533194

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 22    GRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTALESVI 65
             GR   A+   +  D C++  LAAAR +   +  G D  A ESV+
Sbjct: 49350 GRDSAALLNVRATDPCISSCLAAARRIVGAVCTGSDEAAGESVM 49481


>gb|GG744003.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.121,
             whole genome shotgun sequence
          Length = 128295

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 3     GVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILN----GPDP 58
             G TKL P V   A K  + G    AVR  + +DACV+  L  A  +    L      P P
Sbjct: 14964 GPTKLTPAVV--APKGALKGYDRPAVRGHRRHDACVSSDLFLAPTVPALELGRVPASPRP 15137

Query: 59    TALE 62
             T L+
Sbjct: 15138 TTLD 15149


>gb|GG743957.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.75, whole
              genome shotgun sequence
          Length = 160209

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 143    TCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKI 184
              TC   +     +G + G   +PA+  S   R+E VLEH + I
Sbjct: 146831 TCDASAIAHGDVGVESGRALVPATPPS*NDRHEHVLEHGRDI 146706


>gb|GG743895.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.13, whole
              genome shotgun sequence
          Length = 731627

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
 Frame = -3

Query: 136    TMSCGGCTCS------RGSFIGACLGAQV 158
              T SCGGCTC       R SF+G  L AQV
Sbjct: 683235 TCSCGGCTCDALSSCLRPSFLGMAL-AQV 683152


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,716,924
Number of Sequences: 1445
Number of extensions: 238690
Number of successful extensions: 1781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 1199
length of query: 189
length of database: 17,710,878
effective HSP length: 98
effective length of query: 91
effective length of database: 17,569,268
effective search space: 1598803388
effective search space used: 1598803388
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)