TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 82 3e-16 gb|GL376623.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 34 0.071 gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 29 2.3 gb|GL376575.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 29 3.0 gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 3.9 gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 5.1 gb|GL376578.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 5.1 gb|GL376600.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 6.7 gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 27 8.7 >gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582037, whole genome shotgun sequence Length = 1414051 Score = 82.0 bits (201), Expect = 3e-16 Identities = 60/187 (32%), Positives = 85/187 (45%) Frame = -2 Query: 1 MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTA 60 +D + + VVA YAG + +V++ V+V + L AA LE IL A Sbjct: 802119 IDVIALIPVVVALYAGTNSLFTKVDELVKVFYSGQRVRDAALVAAFILEQVILGASVLQA 801940 Query: 61 LESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTXGLPGAFQAAL 120 + IR R KQ + + +A S+ P F N LP F A L Sbjct: 801939 MRMSIRTER-LTVKQRKMIFKAFTK---------SQLPSYEAIQKFGNKGSLPRGFFAVL 801790 Query: 121 HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH 180 + ++Y AVR+ + GG TC R FIGAC AQ GL+ IP SW +TQ Y+ + Sbjct: 801789 QPLFVLSDYPTAVRENIIGGGRTCRRAMFIGACFAAQDGLDAIPESWIKKTQYYDVIETD 801610 Query: 181 AKKITSH 187 A + S+ Sbjct: 801609 ANTLISY 801589 >gb|GL376623.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582026, whole genome shotgun sequence Length = 637279 Score = 34.3 bits (77), Expect = 0.071 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +3 Query: 116 FQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIP 164 F A+H + T+Y A+R T+ GG T + + +G +GA G IP Sbjct: 147588 FVLAIHFLRQNTSYEDAIRQTLLKGGDTDTNAAIVGGLIGALHGERSIP 147734 >gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581354, whole genome shotgun sequence Length = 1199448 Score = 29.3 bits (64), Expect = 2.3 Identities = 22/58 (37%), Positives = 28/58 (48%) Frame = +3 Query: 114 GAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRT 171 G +AA G ++N V V +CG T + GS IG L G PASW+ RT Sbjct: 852948 GVSKAAACGGEDSSNPVAFVAVVPTCGS-TEAAGS*IGTVLLIIQADAGFPASWTERT 853118 >gb|GL376575.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581446, whole genome shotgun sequence Length = 152743 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -1 Query: 64 VIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTP 98 VIR+ R P+R+Q ++ + GHIH+V L K P Sbjct: 138385 VIRRYRLPDREQYHKYNR-LAGHIHRVVARLKKRP 138284 >gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582041, whole genome shotgun sequence Length = 1261388 Score = 28.5 bits (62), Expect = 3.9 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +2 Query: 138 SCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRY 174 SC CT S G F+ A G L P+ + T+RY Sbjct: 662951 SCATCTTSFGFFMDALPGTLATL*AYPSEYCQPTERY 663061 >gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582027, whole genome shotgun sequence Length = 666937 Score = 28.1 bits (61), Expect = 5.1 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = -3 Query: 128 NYVQAVRDTMSCGG-CTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYES 176 N+ + + S G CT S C GA GL G+ AS +SRT + + Sbjct: 589880 NFCRWSESSRSSGS*CTTIARSCCARCKGALCGLSGVWASCTSRTAAFST 589731 >gb|GL376578.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581478, whole genome shotgun sequence Length = 208200 Score = 28.1 bits (61), Expect = 5.1 Identities = 9/13 (69%), Positives = 12/13 (92%) Frame = -3 Query: 142 CTCSRGSFIGACL 154 CTCSRG+F+ AC+ Sbjct: 185164 CTCSRGAFLAACV 185126 >gb|GL376600.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581988, whole genome shotgun sequence Length = 166826 Score = 27.7 bits (60), Expect = 6.7 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -3 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRY 174 C C CS A L +++GL G ++WS + Y Sbjct: 145101 CASCICS------ATLASRIGLTGSQSTWSRHCRNY 145012 >gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581402, whole genome shotgun sequence Length = 979788 Score = 27.3 bits (59), Expect = 8.7 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 140 GGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 GGCT +RGS G C +W SRT+R Sbjct: 20793 GGCTRARGSRRGTCHACP*APSRRRPTWLSRTRR 20692 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,380,477 Number of Sequences: 82 Number of extensions: 171882 Number of successful extensions: 1233 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1144 Number of HSP's gapped (non-prelim): 215 length of query: 189 length of database: 14,267,206 effective HSP length: 96 effective length of query: 93 effective length of database: 14,259,334 effective search space: 1326118062 effective search space used: 1326118062 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.3 bits)