TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   1.7  
gb|CM000624.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   3.0  
gb|CM000627.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   5.0  
gb|CM000626.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   5.0  
gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   5.0  
gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   5.0  

>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun
              sequence
          Length = 976485

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 83     VVGHIHQVKENLSKTPQELIPAVFVNTXGLPGA 115
              VV HI QVK+ L ++PQ  +PA      G  GA
Sbjct: 481210 VVTHIFQVKDPLRRSPQAFLPACISVRRG*RGA 481112


>gb|CM000624.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 22, whole genome shotgun
              sequence
          Length = 591336

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 71     PNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTXGLPG 114
              PN  +   L  +  GH HQ+   L ++P +   A   +T G+ G
Sbjct: 356778 PNSPRTNHLSPSRFGHSHQLSSTLQESPGQNTSATHRDTAGVRG 356647



 Score = 28.1 bits (61), Expect = 3.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 71     PNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTXGLPG 114
              PN  +   L  +  GH HQ+   L ++P +   A   +T G+ G
Sbjct: 351047 PNSPRTNHLSPSRFGHSHQLSSTLQESPGQNTSATHRDTAGVRG 350916


>gb|CM000627.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 25, whole genome shotgun
              sequence
          Length = 497271

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 19/79 (24%), Positives = 29/79 (36%)
 Frame = -3

Query: 82     AVVGHIHQVKENLSKTPQELIPAVFVNTXGLPGAFQAALHGVLTATNYVQAVRDTMSCGG 141
              A++   H +  + +  P+  IPA  + T  L         G L   N++   R  +    
Sbjct: 315613 AMLHGTHFLHIDANPFPRT*IPATLITTFALKKHCSVYPSGSLHVDNFIGCYRKCLCSST 315434

Query: 142    CTCSRGSFIGACLGAQVGL 160
              CTC         LGA   L
Sbjct: 315433 CTCVASCNTLTALGASQSL 315377


>gb|CM000626.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 24, whole genome shotgun
              sequence
          Length = 511739

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 134    RDTMSCGGCTC-SRGSFIGACLGAQVGLEGIPASWSSRTQRYESVL 178
              R    CGG T  SRG F+  C+G      G P      T R+E+VL
Sbjct: 217808 RGEKGCGGATTGSRGVFV*VCVGRGKRF-GTPGKTGVDTIRHETVL 217942


>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
              sequence
          Length = 683011

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 140    GGCTCSRGSFIGACLGAQVGLE 161
              GG    RGS +GA LG+Q GLE
Sbjct: 313729 GGENVHRGSCLGAVLGSQEGLE 313794


>gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 12, whole genome shotgun
              sequence
          Length = 901853

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
 Frame = -1

Query: 53     LNGPDPTALESVIR------QLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVF 106
              ++G DP  L S IR      Q R   +    DLD+    +I  +K NLSK P   +    
Sbjct: 604661 ISGKDP--LRSSIRGISVGSQFRSSLQSLVTDLDRTQPHYIRCIKPNLSKAPGSFLAGEV 604488

Query: 107    VNTXGLPGAFQA 118
              +      G  +A
Sbjct: 604487 LKQLRYSGMMEA 604452


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,249,341
Number of Sequences: 31
Number of extensions: 78896
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 68
length of query: 189
length of database: 7,911,228
effective HSP length: 92
effective length of query: 97
effective length of database: 7,908,376
effective search space: 767112472
effective search space used: 767112472
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)