TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   5.2  
gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic s...    27   8.9  

>gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold11,
               whole genome shotgun sequence
          Length = 1505626

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 138     SCGGCTCSRGSFIGACLGAQVGLEGIP 164
               SC G +CSRG   G+C+   +    +P
Sbjct: 1467440 SCSGSSCSRGGGRGSCISCDLSFIELP 1467360



 Score = 26.9 bits (58), Expect = 8.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 98     PQELIPAVFVNTXGLPGAFQAALHGVLTATNY 129
              PQ+L+P V   +  L  AF +A   VL AT+Y
Sbjct: 833029 PQQLVPEVVSPSSNLSPAFGSAPTPVLAATSY 832934


>gb|GL291005.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig8, whole
               genome shotgun sequence
          Length = 1319729

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = -2

Query: 40      ETLAAARFLEHFI-LNGPDPTALESVIRQLRDP------NRKQAQDLDQAVVGHIHQVKE 92
               E LAA RF   F+  N  D  A + V++ L D       N  +  + +    GH   V+E
Sbjct: 1105231 EELAAFRFDRFFVGANQLDDGANQIVLQDLEDGWLVVVGNGGKQVESNHLGAGHFEFVEE 1105052

Query: 93      NLSKTPQELIPAVFVNTXG 111
               NL      L+  V V+T G
Sbjct: 1105051 NLVDRSDCLMYRVLVDTLG 1104995


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,335,203
Number of Sequences: 42
Number of extensions: 64059
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 29
length of query: 189
length of database: 10,980,844
effective HSP length: 94
effective length of query: 95
effective length of database: 10,976,896
effective search space: 1042805120
effective search space used: 1042805120
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)