TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01001297.1| Hyaloperonospora parasitica strain Emoy2 v-7....    79   4e-15
gb|ABWE01000851.1| Hyaloperonospora parasitica strain Emoy2 v-7....    32   0.69 
gb|ABWE01004152.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   5.8  
gb|ABWE01000284.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   5.8  
gb|ABWE01000846.1| Hyaloperonospora parasitica strain Emoy2 v-7....    28   9.9  

>gb|ABWE01001297.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont82.10, whole
             genome shotgun sequence
          Length = 16137

 Score = 79.0 bits (193), Expect = 4e-15
 Identities = 57/177 (32%), Positives = 81/177 (45%)
 Frame = -2

Query: 1     MDGVTKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTA 60
             +D ++ +  VVA YAG  ++  +V++ V+V           L AA  LE  IL       
Sbjct: 12518 IDVLSLIPIVVALYAGTNQLFTKVDELVKVFYVGTRVRDAALVAAFVLEQVILGA----- 12354

Query: 61    LESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTXGLPGAFQAAL 120
               SV++ +R   R +   + Q  V      K  L   P       F N   LPG F A L
Sbjct: 12353 --SVLQAMRMSIRTERLSVKQRKVIFKAFTKSQL---PSYEAIQKFGNRGSLPGGFHAVL 12189

Query: 121   HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESV 177
               +    +Y  AVR+ +  GG TC R  FIGAC  AQ GL+ IP  W  +TQ ++ +
Sbjct: 12188 QPLFVLNDYPTAVRENIIGGGRTCRRAMFIGACFAAQDGLDVIPEGWIQKTQYFDFI 12018


>gb|ABWE01000851.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont0.56, whole genome
             shotgun sequence
          Length = 25776

 Score = 31.6 bits (70), Expect = 0.69
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 117   QAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGL 160
             Q+ LHGV +   Y Q + D ++CGG  C  GS        Q+GL
Sbjct: 25320 QSGLHGVFSRIKYSQ-ICDWLACGGKYCLSGSL*YCVRDEQIGL 25448


>gb|ABWE01004152.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont785.2, whole
            genome shotgun sequence
          Length = 1214

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = -1

Query: 126  ATNYVQAVRD-----TMSCGGCTCSRGSFI 150
            A N   A+R+     T+ C  CTCSRG F+
Sbjct: 1082 AKNVSHAIRENNCWSTLQCFDCTCSRGKFL 993


>gb|ABWE01000284.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont19.6, whole genome
             shotgun sequence
          Length = 53337

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = +1

Query: 126   ATNYVQAVRD-----TMSCGGCTCSRGSFI 150
             A N   A+R+     T+ C  CTCSRG F+
Sbjct: 27259 AKNVSHAIRENNCWSTLQCFDCTCSRGKFL 27348


>gb|ABWE01000846.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont34.8, whole
            genome shotgun sequence
          Length = 25932

 Score = 27.7 bits (60), Expect = 9.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 146  RGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH 180
            R S +   LGA V L GI   WS+R  ++ + L +
Sbjct: 4660 RRSTLTWVLGASVALSGIKLYWSNRASKHNNALPY 4556


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,491,727
Number of Sequences: 5422
Number of extensions: 212936
Number of successful extensions: 1097
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 595
length of query: 189
length of database: 22,486,378
effective HSP length: 99
effective length of query: 90
effective length of database: 21,949,600
effective search space: 1975464000
effective search space used: 1975464000
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)