TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649739.1| Ectocarpus siliculosus strain Ec 32, whole genom...    32   1.9  
emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genom...    31   2.5  
emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom...    29   9.4  

>emb|FN649739.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG14
          Length = 3614499

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 134     RDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASW 167
               R T+SC  C C     + +CLG   GL   P+ W
Sbjct: 1196671 RGTLSCVVCVCGCLDLLSSCLGLCFGLSFCPSHW 1196772



 Score = 29.3 bits (64), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 139     CGGCTCSRGSFIGACLGAQVGLEGI 163
               CGGC+ S    + ACLG   G  G+
Sbjct: 3274382 CGGCSLSVAMILSACLGRSWGFAGL 3274456


>emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG23
          Length = 3983565

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 89      QVKENLSKTPQELIPAVFVNTXGLPG 114
               Q +  LS+ PQELIPAV   T  +PG
Sbjct: 1443141 QTRSRLSRIPQELIPAVAGRTCAVPG 1443064


>emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly,
                unassigned sequences LGUn
          Length = 58155991

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +3

Query: 91       KENLSKTPQELIPAVFVNTXGLPGAFQAALHGVLTATNYVQAVRDTM---SCGGCTCSRG 147
                K N S +P +      V   GLP AF  A HG       VQA R  +   S   C+C  G
Sbjct: 31231269 KPNHSDSPPKRHGRSMVPPCGLPPAFTFAAHGGF*TQAVVQAKRAQLLSRSLSCCSCPSG 31231448

Query: 148      S 148
                S
Sbjct: 31231449 S 31231451


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,112,844
Number of Sequences: 35
Number of extensions: 865817
Number of successful extensions: 5072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4947
Number of HSP's gapped (non-prelim): 240
length of query: 189
length of database: 65,311,373
effective HSP length: 106
effective length of query: 83
effective length of database: 65,307,663
effective search space: 5420536029
effective search space used: 5420536029
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)