TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    28   0.92 
gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol...    27   3.5  
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    25   7.8  
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    25   7.8  

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 28.5 bits (62), Expect = 0.92
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
 Frame = -1

Query: 138    SCGGCTCSRGSFI---GACLGA 156
              SCGGC+CS GS     G+C G+
Sbjct: 239174 SCGGCSCSSGSSCGGSGSCCGS 239109


>gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun
              sequence
          Length = 1278458

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +3

Query: 139    CGGCTCSRGS 148
              CGGCTCS+G+
Sbjct: 766107 CGGCTCSKGT 766136


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
              sequence
          Length = 1332857

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = +1

Query: 48     LEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAV 105
              L+H +LNGP+  +   + + + + N   + + + A   +  +V E + +T   L+  +
Sbjct: 629824 LDHCVLNGPENHSSIEICKDIHESNSNCSINSESAPKSNPKRVFEMIDRTLNTLLEKI 629997


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 128    NYVQAVRDTMSCGGCTCSRGSFIG 151
              +Y+  V+ TM+C G TC    F G
Sbjct: 140367 HYLNLVKKTMTCFGGTCGERIFCG 140438


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,338,813
Number of Sequences: 8
Number of extensions: 14193
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 19
length of query: 189
length of database: 3,034,108
effective HSP length: 86
effective length of query: 103
effective length of database: 3,033,420
effective search space: 312442260
effective search space used: 312442260
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)