TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 45 2e-05 supercontig_1.14 of Capsaspora owczarzaki ATCC 30864 32 0.31 supercontig_1.77 of Capsaspora owczarzaki ATCC 30864 30 0.91 supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 30 0.91 supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 30 1.2 supercontig_1.16 of Capsaspora owczarzaki ATCC 30864 28 3.4 supercontig_1.66 of Capsaspora owczarzaki ATCC 30864 28 4.5 supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 28 4.5 supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 28 4.5 supercontig_1.33 of Capsaspora owczarzaki ATCC 30864 27 5.9 supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 27 5.9 supercontig_1.6 of Capsaspora owczarzaki ATCC 30864 27 5.9 supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 27 7.7 >supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 Length = 3794667 Score = 45.4 bits (106), Expect = 2e-05 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Frame = -3 Query: 50 HFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNT 109 +F + G D +A S +++ + A++ N KT + ++ Sbjct: 1568215 NFDVQGKDSSADSSSAKRIETEEERNARE----------SKLRNRPKTKMNARSLLMISK 1568066 Query: 110 XGLP-GAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWS 168 G A AA++ VL + N +A+ GG SRG IG GA G+E IPA W Sbjct: 1568065 SGATEAALPAAIYLVLRSKNLEEALIANALLGGDAASRGMVIGMIFGASQGIEAIPARWI 1567886 Query: 169 SRTQRYESV 177 S + +S+ Sbjct: 1567885 SSLRSLDSL 1567859 Score = 27.3 bits (59), Expect = 5.9 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +2 Query: 5 TKLAPVVAFYAGKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNG 55 T APV +PE L E + V N D A TL A R + H +L+G Sbjct: 2478029 TSRAPVSRGAGSQPESLQTKEQVLVVASNTDLLFAVTLRAFR-VAH*LLSG 2478178 >supercontig_1.14 of Capsaspora owczarzaki ATCC 30864 Length = 919646 Score = 31.6 bits (70), Expect = 0.31 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = -2 Query: 56 PDPTALESVIRQLRDPNRKQAQDLDQAVVGH--IHQVKENLSKTPQE 100 P PT+ ES R+ RDP + A ++ Q G HQV +KT QE Sbjct: 164854 PSPTSWESGTRRQRDPREEPASEIHQKQAGRWTFHQVS---TKTTQE 164723 >supercontig_1.77 of Capsaspora owczarzaki ATCC 30864 Length = 5671 Score = 30.0 bits (66), Expect = 0.91 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 10/129 (7%) Frame = -3 Query: 55 GPDPTALESVIRQLRD----PNRKQAQDLDQAVVGH---IHQVKENLSKTPQELIPAVFV 107 GP PTA + +Q RD P+R +A+ + ++G + Q + L + PA Sbjct: 3899 GPQPTATLAHPQQSRDEFSQPSRLEARSHCE*LLGCQELLLQHRRLLMRRRDHAWPA--- 3729 Query: 108 NTXGLPGAFQAALHGVLTA---TNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIP 164 N+ A Q +L T T+ + ++ D + TC RGS +G G Q GLE Sbjct: 3728 NSGLCAFAAQMSLESTGTLRRRTSTLGSITDRLR----TCDRGSDLGEKAGRQDGLEA-S 3564 Query: 165 ASWSSRTQR 173 WS T R Sbjct: 3563 GLWSRTTSR 3537 >supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 Length = 2526540 Score = 30.0 bits (66), Expect = 0.91 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 10/100 (10%) Frame = +3 Query: 18 PEMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTALESVIRQL------RDP 71 P++L + ++ Q +DAC A L+H + G + ++QL R Sbjct: 163170 PKLLHPNSEEHQIAQQHDACRAHRAVHVTRLQHGVQQG--HVVFRNFVQQLLRAHAQRTD 163343 Query: 72 NRKQAQDLDQAVVGHIHQVKENLSKTPQ----ELIPAVFV 107 NRK+ +++ Q VV H + PQ E P +FV Sbjct: 163344 NRKKEKNMGQNVVSAKHNHQATSKCIPQTTRLEPGPCLFV 163463 Score = 29.3 bits (64), Expect = 1.5 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +1 Query: 128 NYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGL 160 +YV V + CGGC +R G CL A V + Sbjct: 773035 SYVHVVLSIVECGGCVIARFIVWGCCLFAAVSV 773133 Score = 27.3 bits (59), Expect = 5.9 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = -3 Query: 143 TCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 TC RGS +G G Q GLE WS T R Sbjct: 1602388 TCDRGSDLGEKAGRQDGLEA-SGLWSRTTSR 1602299 Score = 26.9 bits (58), Expect = 7.7 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +3 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQ 172 C G CSR S +C G G +SW +RT+ Sbjct: 1679280 CFGTRCSRASLASSCAGTTPIASG--SSWRTRTR 1679375 >supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 Length = 1512001 Score = 29.6 bits (65), Expect = 1.2 Identities = 20/57 (35%), Positives = 25/57 (43%) Frame = -3 Query: 98 PQELIPAVFVNTXGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACL 154 P +L+PAVF AALH T T A+ SC CT + F +CL Sbjct: 425294 PHDLLPAVF-----------AALHAPPTPTEQCHAISPDCSCAVCTAAGVHF--SCL 425163 Score = 27.3 bits (59), Expect = 5.9 Identities = 11/55 (20%), Positives = 26/55 (47%) Frame = -1 Query: 132 AVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKITS 186 A++ S +CSR G + G+P + + R++ +E+ + + +T+ Sbjct: 1254463 AIKSAASASNMSCSRDPAAGGTCSSCASSSGVPVTSTRRSENFETSMSASFTLTA 1254299 Score = 27.3 bits (59), Expect = 5.9 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = -1 Query: 143 TCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 TC RGS +G G Q GLE WS T R Sbjct: 485086 TCDRGSDLGEKAGRQDGLEA-SGLWSRTTSR 484997 >supercontig_1.16 of Capsaspora owczarzaki ATCC 30864 Length = 797998 Score = 28.1 bits (61), Expect = 3.4 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -1 Query: 139 CGGCTCSRGSFIGACLGAQVGL 160 CGG TC+ G GACLGA L Sbjct: 637468 CGG*TCAWGCG*GACLGAFAAL 637403 >supercontig_1.66 of Capsaspora owczarzaki ATCC 30864 Length = 7200 Score = 27.7 bits (60), Expect = 4.5 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = -1 Query: 143 TCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 TC RGS +G G Q GLE WS T R Sbjct: 5238 TCDRGSDLGEKAGGQDGLEA-SGLWSCTTSR 5149 >supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 Length = 2141673 Score = 27.7 bits (60), Expect = 4.5 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +2 Query: 113 PGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQV 158 PG Q H +L + +QA R + SCG +R S + AQV Sbjct: 1282157 PGRVQR*EHSLLVQGSNIQAARGSRSCGTANGARSSDLHRVCLAQV 1282294 Score = 26.9 bits (58), Expect = 7.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -3 Query: 121 HGVLTATNYVQAVRDTMSCGGCTCSRG 147 +G T+ A + CGGC CSRG Sbjct: 592594 NGARTSLVAAPAYNRVIPCGGCCCSRG 592514 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 27.7 bits (60), Expect = 4.5 Identities = 15/49 (30%), Positives = 20/49 (40%) Frame = -2 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKITSH 187 C C+ + C+G G +G WS R QR AK+ T H Sbjct: 643043 CPSSPCTGA*SVA*CVGQSPGHQGECHRWSQRPQRRRCRWSGAKRRTCH 642897 >supercontig_1.33 of Capsaspora owczarzaki ATCC 30864 Length = 11895 Score = 27.3 bits (59), Expect = 5.9 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = -3 Query: 143 TCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 TC RGS +G G Q GLE WS T R Sbjct: 3403 TCDRGSDLGEKAGRQDGLEA-SGLWSRTTSR 3314 >supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 Length = 955311 Score = 27.3 bits (59), Expect = 5.9 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = -3 Query: 143 TCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 TC RGS +G G Q GLE WS T R Sbjct: 465583 TCDRGSDLGEKAGRQDGLEA-SGLWSRTTSR 465494 >supercontig_1.6 of Capsaspora owczarzaki ATCC 30864 Length = 1617845 Score = 27.3 bits (59), Expect = 5.9 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -1 Query: 112 LPGAFQAALHGVLTA-TNYVQAVRDTMSCGGCTC 144 +P A +A + TA T + ++ R +CGGC C Sbjct: 1462562 IPRACPSAREPIATARTRFPRSARGVCTCGGCAC 1462461 Score = 26.9 bits (58), Expect = 7.7 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%) Frame = +2 Query: 87 IHQVKENLSKTPQELIPAVFVNTXGLPGAFQAALHG-----VLTATNYVQAVRDTMSCGG 141 +H++K N + L V+ G P F+ HG VL + VQA + ++ Sbjct: 948311 VHEIKVNQIVDAERLEEQHDVSQVG-PLDFR---HGRLFELVLESPRRVQA--EALARSH 948472 Query: 142 CTCSRGSFIGACLG 155 TC+ GS +G CLG Sbjct: 948473 ATCAAGSLVGGCLG 948514 >supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 Length = 1380613 Score = 26.9 bits (58), Expect = 7.7 Identities = 19/62 (30%), Positives = 25/62 (40%) Frame = +1 Query: 114 GAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 GA Q + +A NY A T+ TC + AC + G I W RTQ Sbjct: 1142443 GALQIGPVALTSANNYASAFPITLGALP-TCGTQA---ACTSSTSGCNSISGLWFDRTQL 1142610 Query: 174 YE 175 Y+ Sbjct: 1142611 YD 1142616 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,062,082 Number of Sequences: 89 Number of extensions: 123316 Number of successful extensions: 920 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 669 Number of HSP's gapped (non-prelim): 583 length of query: 189 length of database: 9,347,932 effective HSP length: 93 effective length of query: 96 effective length of database: 9,339,655 effective search space: 896606880 effective search space used: 896606880 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.6 bits)