TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl... 29 0.94 dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl... 28 2.1 dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 28 2.1 dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl... 28 2.7 dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp... 27 3.6 dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 27 4.7 dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp... 27 4.7 >dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete sequence Length = 481791 Score = 29.3 bits (64), Expect = 0.94 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -1 Query: 121 HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGA 156 HGVL+ Y+ + R T + C SRGS + +GA Sbjct: 115752 HGVLSQYRYMSSERHTFTKNRCVDSRGSRYKSAIGA 115645 Score = 27.7 bits (60), Expect = 2.7 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Frame = +2 Query: 21 LGRVEDAVRVTQNNDACVAETLAAA--------RFLEHFILNGPDPTALESVIRQ--LRD 70 LGR+ +A+ T+NND C + A R +H +L+ A+ S Q L Sbjct: 371156 LGRI-NALISTKNNDRCGSSVYAMLLQHMA*RWR*RQHRMLSR---CAIRST*YQ*ALTR 371323 Query: 71 PNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTXGLPGAFQAALHGVLTATNYV 130 K++ L H+H+V E+L++ + V PG FQA + T Sbjct: 371324 SRCKRSDRLTMRHFRHVHEVGEHLTEESAKQPTCRIVVLVSFPGRFQAITETLQHLTQLQ 371503 Query: 131 QAVR 134 + +R Sbjct: 371504 RLIR 371515 >dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete sequence Length = 810151 Score = 28.1 bits (61), Expect = 2.1 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -2 Query: 29 RVTQNNDACVAETLAAARFLEHFILNGPDPTALES 63 R ++ C A + RF+EH + NG PTA S Sbjct: 177792 RAPESWQTCNASDIPLQRFVEHQLSNGTPPTAAAS 177688 Score = 26.6 bits (57), Expect = 6.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -2 Query: 143 TCSRGSFIGACLGAQVGLEGIPASWSSR 170 T +R IGAC L+ +P SW SR Sbjct: 237105 TSARSCGIGACTVPSTPLDCLPRSWKSR 237022 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 28.1 bits (61), Expect = 2.1 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 5/113 (4%) Frame = +1 Query: 67 QLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQEL-----IPAVFVNTXGLPGAFQAALH 121 QL N L++ V+ IH S+ P ++ +P FV+ + AF+A H Sbjct: 1166593 QLETKNT**EPGLNRCVID-IHDRLSITSRQPAKISV*QWLPGRFVSNKAVC*AFRANQH 1166769 Query: 122 GVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRY 174 + T+ G ++G +GA G VGL P R RY Sbjct: 1166770 AAICTTH------------GILLTQGGRVGAHQGNSVGLHEAPICSRCRRARY 1166892 Score = 27.3 bits (59), Expect = 3.6 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +3 Query: 109 TXGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCT 143 T + GA ALHGV +Q VR+ GC+ Sbjct: 90531 TDPVGGATPVALHGVHQQATLLQCVREVRKVAGCS 90635 Score = 26.2 bits (56), Expect = 8.0 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = +1 Query: 126 ATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 A N+ + R ++ GGC ++ S I + + + + P+SWS ++R Sbjct: 242962 AANW*SSSRTSICTGGCERTKRSLIHSPIPSGIREMRPPSSWSRNSRR 243105 >dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete sequence Length = 528682 Score = 27.7 bits (60), Expect = 2.7 Identities = 17/65 (26%), Positives = 31/65 (47%) Frame = +3 Query: 117 QAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYES 176 ++++H +TA++ +Q GGC C R + C GA++ + R +R S Sbjct: 285747 RSSIHEQMTASSGIQ--------GGCRCRRCGVVDPCDGARLERR----ACRERCRRSSS 285890 Query: 177 VLEHA 181 +HA Sbjct: 285891 AFDHA 285905 >dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete sequence Length = 852727 Score = 27.3 bits (59), Expect = 3.6 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +3 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQR 173 CG TCS S G +V L+ PA W RT+R Sbjct: 76083 CGR*TCSERSLS*GATGTRVALK--PAQWRWRTRR 76181 >dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete sequence Length = 1253087 Score = 26.9 bits (58), Expect = 4.7 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = -3 Query: 143 TCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKITSH 187 TC+R S+ G C+ A+V A W R S +I +H Sbjct: 857613 TCARVSYAGRCVTARVARSSYRAGWRYPGSRRSSSTGGRGRIFAH 857479 Score = 26.2 bits (56), Expect = 8.0 Identities = 12/47 (25%), Positives = 20/47 (42%) Frame = -2 Query: 109 TXGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLG 155 T L F A +L ++ + + ++SC C SF +C G Sbjct: 806137 TSSLSCTF*VAGSTLLFSSCFAEPTTSSLSCTSCVAGSASFFSSCFG 805997 >dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete sequence Length = 1282939 Score = 26.9 bits (58), Expect = 4.7 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = -3 Query: 131 QAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQ-RYESVLEHAKK 183 Q+ D C GA GAQ GLE IP +SR + R +LE +++ Sbjct: 796613 QSAHDVRQCEAAPAHAFMRNGAGRGAQPGLEAIPELQTSRYRFRIRRILEMSQR 796452 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,161,448 Number of Sequences: 20 Number of extensions: 71276 Number of successful extensions: 484 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 418 Number of HSP's gapped (non-prelim): 170 length of query: 189 length of database: 5,515,582 effective HSP length: 90 effective length of query: 99 effective length of database: 5,513,782 effective search space: 545864418 effective search space used: 545864418 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)