TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668638.1| Blastocystis hominis, Singapore isolate B (sub-t...    28   2.4  
emb|FN668691.1| Blastocystis hominis, Singapore isolate B (sub-t...    27   4.0  
emb|FN668688.1| Blastocystis hominis, Singapore isolate B (sub-t...    27   5.3  
emb|FN668654.1| Blastocystis hominis, Singapore isolate B (sub-t...    27   6.9  
emb|FN668656.1| Blastocystis hominis, Singapore isolate B (sub-t...    27   6.9  
emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-t...    26   9.0  

>emb|FN668638.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_0
          Length = 1966360

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 143    TCSRGSFIGACLGAQVGL--EGIPASWSSRTQRYESVLEHAKKITS 186
              TC+   F+GA LG  +G    G P+S SS +       E A   TS
Sbjct: 387836 TCATAGFLGAALGFSLGFSSSGSPSSSSSSSSESSESSEKANA*TS 387699



 Score = 26.6 bits (57), Expect = 6.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 71      PNRKQAQDLDQAVVGHIH 88
               PNR + +DL+Q +  H+H
Sbjct: 1656994 PNRYKLEDLEQVIAAHVH 1657047


>emb|FN668691.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_9
          Length = 642864

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
 Frame = +3

Query: 136    TMSCGGCTCSRGSFIGA--------CLGAQVGLEGIPA 165
              +++C GC C  G  IGA        C+GA   + G+P+
Sbjct: 133653 SIACSGCGCGCGCSIGAIESIDCTGCIGAMGCICGVPS 133766


>emb|FN668688.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_6
          Length = 900598

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 145    SRGSFIGACLGAQVGLEGIPASWSSRTQR 173
              SR  + G C+G + G +   ASW+S   R
Sbjct: 662326 SRSRWTGVCIGCKTGSKSRTASWTSSKWR 662412


>emb|FN668654.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_23
          Length = 240939

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = -2

Query: 139    CGGCT----CSRGSFIGACLGAQVG-LEG 162
              CG C     CS+ S  G CLG  +G LEG
Sbjct: 200906 CGNCCDSTGCSQASECGTCLGVGIGCLEG 200820


>emb|FN668656.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
             shotgun sequence assembly, scaffold_25
          Length = 182596

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +1

Query: 138   SCGGCTCSRGSFIGACLGAQVGLEG--IPASWSS 169
             S  GC+CSRG    AC   +        PA+WSS
Sbjct: 87352 SSPGCSCSRGRKFSACSSPRRPRRSSPSPATWSS 87453


>emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_1
          Length = 1866585

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 24     VEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTAL 61
              V+  + +TQ++   ++E   + R ++ FI+ G DPT +
Sbjct: 152890 VQADITITQSSTGSLSEGGLSRRNMKGFIIQGGDPTGI 152777


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,781,834
Number of Sequences: 54
Number of extensions: 52552
Number of successful extensions: 271
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 89
length of query: 189
length of database: 6,272,415
effective HSP length: 91
effective length of query: 98
effective length of database: 6,267,501
effective search space: 614215098
effective search space used: 614215098
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)