TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: A.taiwanensis/genome.fa 5379 sequences; 6,149,411 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABJQ01001337.1| Ascogregarina taiwanensis Contig1539, whole g... 27 1.1 gb|ABJQ01000314.1| Ascogregarina taiwanensis Contig398, whole ge... 23 1.3 gb|ABJQ01000838.1| Ascogregarina taiwanensis Contig978, whole ge... 26 2.5 gb|ABJQ01003335.1| Ascogregarina taiwanensis Contig3672, whole g... 25 4.3 gb|ABJQ01003512.1| Ascogregarina taiwanensis CLRanP136-A07.g1.ab... 25 5.6 gb|ABJQ01003361.1| Ascogregarina taiwanensis Contig3700, whole g... 25 5.6 gb|ABJQ01003229.1| Ascogregarina taiwanensis Contig3563, whole g... 25 5.6 gb|ABJQ01001989.1| Ascogregarina taiwanensis Contig2251, whole g... 25 5.6 gb|ABJQ01000922.1| Ascogregarina taiwanensis Contig1070, whole g... 25 5.6 gb|ABJQ01002882.1| Ascogregarina taiwanensis Contig3205, whole g... 25 7.3 gb|ABJQ01002760.1| Ascogregarina taiwanensis Contig3078, whole g... 25 7.3 gb|ABJQ01003051.1| Ascogregarina taiwanensis Contig3384, whole g... 24 9.6 gb|ABJQ01002256.1| Ascogregarina taiwanensis Contig2551, whole g... 24 9.6 gb|ABJQ01001751.1| Ascogregarina taiwanensis Contig1994, whole g... 24 9.6 gb|ABJQ01001417.1| Ascogregarina taiwanensis Contig1627, whole g... 24 9.6 >gb|ABJQ01001337.1| Ascogregarina taiwanensis Contig1539, whole genome shotgun sequence Length = 718 Score = 27.3 bits (59), Expect = 1.1 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 86 HIHQVKENLSKTPQELIPAVFVNTXGLPGAFQAA 119 H V+E+L KTP++L+P V T P Q++ Sbjct: 41 HRGTVQEDLRKTPEQLLPPVVHCTRSAPNQRQSS 142 >gb|ABJQ01000314.1| Ascogregarina taiwanensis Contig398, whole genome shotgun sequence Length = 1000 Score = 23.5 bits (49), Expect(2) = 1.3 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -3 Query: 119 ALHGVLTATNYVQAVRDTMSCGGCTCSRG 147 +L+ +L +++ + R SCG C C RG Sbjct: 458 SLYWLLKSSS*LFCCRGGASCGCCCCRRG 372 Score = 21.9 bits (45), Expect(2) = 1.3 Identities = 7/14 (50%), Positives = 8/14 (57%) Frame = -3 Query: 140 GGCTCSRGSFIGAC 153 GGC C G+ G C Sbjct: 308 GGCCCRGGASCGCC 267 Score = 21.9 bits (45), Expect(2) = 4.3 Identities = 7/14 (50%), Positives = 8/14 (57%) Frame = -3 Query: 140 GGCTCSRGSFIGAC 153 GGC C G+ G C Sbjct: 212 GGCCCRGGASCGCC 171 Score = 21.6 bits (44), Expect(2) = 4.3 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = -3 Query: 134 RDTMSCGGCTCSRG 147 R SCG C C RG Sbjct: 293 RGGASCGCCCCRRG 252 >gb|ABJQ01000838.1| Ascogregarina taiwanensis Contig978, whole genome shotgun sequence Length = 1601 Score = 26.2 bits (56), Expect = 2.5 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 118 AALHGVLTATNYVQAVRDTMSCGGCTCSRGS 148 A + V TATN+V+ + CG C+ +R S Sbjct: 1063 ACHNSVCTATNHVRISNRIIPCGHCSVARTS 1155 >gb|ABJQ01003335.1| Ascogregarina taiwanensis Contig3672, whole genome shotgun sequence Length = 4492 Score = 25.4 bits (54), Expect = 4.3 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 2424 NCGGCCASSGSG-GCCAGSNCG 2486 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 761 NCGGCCASSGSG-GCCAGSNSG 823 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +2 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 1712 CGGCCASSGSG-GCCAGSNSG 1771 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +3 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 2778 CGGCCASSGSG-GCCAGSNSG 2837 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +3 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 3129 CGGCCASSGSG-GCCAGSNSG 3188 >gb|ABJQ01003512.1| Ascogregarina taiwanensis CLRanP136-A07.g1.ab1, whole genome shotgun sequence Length = 758 Score = 25.0 bits (53), Expect = 5.6 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -1 Query: 41 TLAAARFLEHFILNGPDPTALESVIRQLRDPNR 73 +L A F +H++LN P P+ ++ + L R Sbjct: 347 SLHMAEFFDHYLLNAPRPSWMDQPVPWLERGKR 249 >gb|ABJQ01003361.1| Ascogregarina taiwanensis Contig3700, whole genome shotgun sequence Length = 6521 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 2688 NCGGCCASSGSG-GCCAGSNSG 2750 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 3027 NCGGCCASSGSG-GCCAGSNSG 3089 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 4665 NCGGCCASSGSG-GCCAGSNSG 4727 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 4746 NCGGCCASSGSG-GCCAGSNSG 4808 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 5532 NCGGCCASSGSG-GCCAGSNSG 5594 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +3 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 564 CGGCCASSGSG-GCCAGSNSG 623 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +3 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 1467 CGGCCASSGSG-GCCAGSNSG 1526 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +3 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 5223 CGGCCASSGSG-GCCAGSNSG 5282 >gb|ABJQ01003229.1| Ascogregarina taiwanensis Contig3563, whole genome shotgun sequence Length = 4422 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 2888 NCGGCCASSGSG-GCCAGSNSG 2950 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 3305 NCGGCCASSGSG-GCCAGSNSG 3367 >gb|ABJQ01001989.1| Ascogregarina taiwanensis Contig2251, whole genome shotgun sequence Length = 1206 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 672 NCGGCCASSGSG-GCCAGSNSG 734 Score = 25.0 bits (53), Expect = 5.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 138 SCGGCTCSRGSFIGACLGAQVG 159 +CGGC S GS G C G+ G Sbjct: 903 NCGGCCASSGSG-GCCAGSNSG 965 >gb|ABJQ01000922.1| Ascogregarina taiwanensis Contig1070, whole genome shotgun sequence Length = 1583 Score = 25.0 bits (53), Expect = 5.6 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -1 Query: 111 GLPGAFQAALHGVLTATNYVQAVRDTMSC 139 G+ G ALH VL A N ++ MSC Sbjct: 1517 GISGCVTTALHKVLAAENTFIRKQELMSC 1431 >gb|ABJQ01002882.1| Ascogregarina taiwanensis Contig3205, whole genome shotgun sequence Length = 2418 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -3 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 904 CGGCCASSGSG-GCCAGSNSG 845 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -3 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 406 CGGCCASSGSG-GCCAGSNSG 347 >gb|ABJQ01002760.1| Ascogregarina taiwanensis Contig3078, whole genome shotgun sequence Length = 1221 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -2 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 965 CGGCCASSGSG-GCCAGSNSG 906 Score = 24.6 bits (52), Expect = 7.3 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -2 Query: 139 CGGCTCSRGSFIGACLGAQVG 159 CGGC S GS G C G+ G Sbjct: 764 CGGCCASSGSG-GCCAGSNSG 705 >gb|ABJQ01003051.1| Ascogregarina taiwanensis Contig3384, whole genome shotgun sequence Length = 3737 Score = 24.3 bits (51), Expect = 9.6 Identities = 8/11 (72%), Positives = 8/11 (72%) Frame = -3 Query: 139 CGGCTCSRGSF 149 CGGC C R SF Sbjct: 1539 CGGCCCFRSSF 1507 >gb|ABJQ01002256.1| Ascogregarina taiwanensis Contig2551, whole genome shotgun sequence Length = 1609 Score = 24.3 bits (51), Expect = 9.6 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 81 QAVVGHIHQVKENLSKTPQELIP 103 Q V H+H+V +TPQ +P Sbjct: 43 QHVTRHLHKVAAREEETPQNFVP 111 >gb|ABJQ01001751.1| Ascogregarina taiwanensis Contig1994, whole genome shotgun sequence Length = 945 Score = 24.3 bits (51), Expect = 9.6 Identities = 9/16 (56%), Positives = 9/16 (56%) Frame = +1 Query: 152 ACLGAQVGLEGIPASW 167 AC Q G EG PA W Sbjct: 724 ACFNKQAGSEGAPAIW 771 >gb|ABJQ01001417.1| Ascogregarina taiwanensis Contig1627, whole genome shotgun sequence Length = 770 Score = 24.3 bits (51), Expect = 9.6 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -3 Query: 26 DAVRVTQNNDACVAETLAAARFLEHFILNGPDPTA 60 DA R+ +++ VAE L+ FLE F L P P A Sbjct: 291 DACRLLLSDEEAVAELLS*DSFLEIF-LQAPAPVA 190 Database: A.taiwanensis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 6,149,411 Number of sequences in database: 5379 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,393,969 Number of Sequences: 5379 Number of extensions: 21182 Number of successful extensions: 201 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 201 length of query: 189 length of database: 2,049,803 effective HSP length: 82 effective length of query: 107 effective length of database: 1,608,725 effective search space: 172133575 effective search space used: 172133575 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)