TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ADP-ribosylation/Crystallin J1 #Arcobacter nitrofigilis (353 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 73 2e-13 supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 30 3.1 supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 30 3.1 supercontig_1.16 of Capsaspora owczarzaki ATCC 30864 29 4.1 >supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 Length = 3794667 Score = 73.2 bits (178), Expect = 2e-13 Identities = 37/88 (42%), Positives = 56/88 (63%) Frame = -3 Query: 265 IKVGKASPTEGTMPGSIYFILKYANKEDGLKKALQANAMVGGDNASRGIMIGMVLGAYFG 324 + + K+ TE +P +IY +L+ N L++AL ANA++GGD ASRG++IGM+ GA G Sbjct: 1568080 LMISKSGATEAALPAAIYLVLRSKN----LEEALIANALLGGDAASRGMVIGMIFGASQG 1567913 Query: 325 VNAIPKEWRDTLDQWDYCEELLNKLPLL 352 + AIP W +L D + L +LPL+ Sbjct: 1567912 IEAIPARWISSLRSLDSLNDGLARLPLV 1567829 Score = 43.9 bits (102), Expect = 2e-04 Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 3/243 (1%) Frame = -3 Query: 8 DSIRGAFFASIVADALCLGSHYEYDAKKIYKAYGEKPIEKFMSPGEMMGGMTHGIGWGEQ 67 + IR A + V DAL L + EY + KI A+ K I +F + + + Sbjct: 1569046 ERIRAALLGAFVGDALALSTQGEYQSNKIRSAF-PKTIREFAASIK------------KS 1568906 Query: 68 NYHPGKKAGGTTDYGDYNILILEHLAKT-ANPIQEFDVKAIIPHWMNRLENSWGSWICTM 126 + GK AG T+ G + L + K + + +V AI + I + Sbjct: 1568905 KTNEGKFAGDLTEVGQVVLATLTEVEKQYESGSSQLNVPAI------------QTAISSA 1568762 Query: 127 TRETYAQVKRGVKTEDLGGYSNATAIRHVAAHAYYDDEEVLVDVAKKAM-FTHKESHALG 185 R+ Y + ++R + DE VL A+ TH Sbjct: 1568761 ARQAYGAAPPSTSN------TLDASLRFLPLVGVESDETVLATKARLLSDATHDNEDPRD 1568600 Query: 186 GAEFFARVTNRVIN-GTNPRVAIEEVGKLMGGFYQDKVNQAIAKYEEESNPESDLSKEQF 244 AEF ARV R+++ +P AI V K M +QD N+ + ++NP ++ + Sbjct: 1568599 AAEFLARVIYRIVHIRQSPNDAINAVLKFMLAQHQDARNRRL-----KTNPSLHVTGDST 1568435 Query: 245 SDD 247 DD Sbjct: 1568434 KDD 1568426 Score = 28.9 bits (63), Expect = 5.3 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 1/108 (0%) Frame = -3 Query: 132 AQVKRGVKTEDLGGYSNATAIRHVAAHAYYDDEEVLVDVAKKAMFTHK-ESHALGGAEFF 190 A+ K + G ++ R V + +DDE V ++ + E H L G F Sbjct: 2732227 AESKPTGNSASAGSNGASSGARAVRTNDGFDDEHHDYIVRSGEVWLDRYEIHNLIGKGSF 2732048 Query: 191 ARVTNRVINGTNPRVAIEEVGKLMGGFYQDKVNQAIAKYEEESNPESD 238 +V + TN VAI+ + Q K+ + +Y ++PE + Sbjct: 2732047 GQVVQAIDRHTNEMVAIKVIKNKHAFSMQAKIEIELLEYMNRNDPEDN 2731904 >supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 Length = 955311 Score = 29.6 bits (65), Expect = 3.1 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 147 SNATAIRHVAAHAYYDDEEVLVDVAKKAMFTHKESHALGG 186 +N++AI AAH + V D+A+K + HK HA+ G Sbjct: 26585 ANSSAIDSGAAHNVVVERNVRHDLARKLVLKHKAVHAIVG 26704 >supercontig_1.9 of Capsaspora owczarzaki ATCC 30864 Length = 1380613 Score = 29.6 bits (65), Expect = 3.1 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Frame = +1 Query: 260 GRSEPIK-VGKASPTEGTMPGS--IYFILKYANKEDGLK----KALQANAMVGGDNASRG 312 GR+E ++ +G S T G+ G I F + NK LK ++ Q + ++ G N Sbjct: 677650 GRTEAVRRIGNQSSTHGSKDGGAKIVFEERVGNKSLRLKWPQLRSWQ-DKILEGANVQGN 677826 Query: 313 IMIGMVLGAYFGVN 326 + + VLGA FG+N Sbjct: 677827 VNVNGVLGALFGLN 677868 Score = 28.5 bits (62), Expect = 7.0 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = -3 Query: 231 EESNPESDLSKEQFSDDLALTSMARLWDVGRSEPIKVGKASPTEGTMPGSIYFI 284 E ++P+S L+ S A L VGRS+ + V ++ P+ PG + FI Sbjct: 893030 EYAHPQSPFPGLLVDPALSGASSANLERVGRSKAVAVLRSLPSSPLSPGCVVFI 892869 >supercontig_1.16 of Capsaspora owczarzaki ATCC 30864 Length = 797998 Score = 29.3 bits (64), Expect = 4.1 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%) Frame = +1 Query: 106 AIIPHWMN---RLENSWGSWI 123 AI PHWMN R ++WG WI Sbjct: 79642 AISPHWMNWTARPHSAWGPWI 79704 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.316 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,205,553 Number of Sequences: 89 Number of extensions: 128448 Number of successful extensions: 712 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 648 Number of HSP's gapped (non-prelim): 168 length of query: 353 length of database: 9,347,932 effective HSP length: 100 effective length of query: 253 effective length of database: 9,339,032 effective search space: 2362775096 effective search space used: 2362775096 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 61 (28.1 bits)