TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|219119981|ref|XP_002180739.1| glutathione peroxidase
[Phaeodactylum tricornutum CCAP 1055/1]
         (157 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...   294   1e-80
gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    94   4e-20
gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   1.6  

>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome
             shotgun sequence
          Length = 976485

 Score =  294 bits (753), Expect = 1e-80
 Identities = 142/142 (100%), Positives = 142/142 (100%)
 Frame = +2

Query: 1     SFFDLSAKDIDGNAIAFESFRGKVTVLTNVASYCGYTESHYRGLVELWSVMSDKAVEILA 60
             SFFDLSAKDIDGNAIAFESFRGKVTVLTNVASYCGYTESHYRGLVELWSVMSDKAVEILA
Sbjct: 34937 SFFDLSAKDIDGNAIAFESFRGKVTVLTNVASYCGYTESHYRGLVELWSVMSDKAVEILA 35116

Query: 61    FPCNQFGAQEPEEADKIKDFASSKGVRFRIMEKINVNGPNAHQVYKYLKAQAGPPTINWN 120
             FPCNQFGAQEPEEADKIKDFASSKGVRFRIMEKINVNGPNAHQVYKYLKAQAGPPTINWN
Sbjct: 35117 FPCNQFGAQEPEEADKIKDFASSKGVRFRIMEKINVNGPNAHQVYKYLKAQAGPPTINWN 35296

Query: 121   FGTYFVVGPDGVVESHSGVGPM 142
             FGTYFVVGPDGVVESHSGVGPM
Sbjct: 35297 FGTYFVVGPDGVVESHSGVGPM 35362


>gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 18, whole genome shotgun
              sequence
          Length = 702471

 Score = 93.6 bits (231), Expect = 4e-20
 Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
 Frame = +2

Query: 1      SFFDLSAKDIDGNAIAFESFRGKVTVLTNVASYCGYTESHYRGLVELWSVMSDKAVEILA 60
              SF+  + K +DG A+   SF G V ++ NVAS  G T+ +Y  L +L      + ++ILA
Sbjct: 446483 SFYSCADKSMDGEAVPMSSFEGNVCLVVNVASK*GLTKMNYTQLPQLVDEYGSRGLKILA 446662

Query: 61     FPCNQFGAQEPEEADKIKDFAS----SKGVRFRIMEKINVNGPNAHQVYKYLKA----QA 112
              FPCNQFG QEP   ++I  F +        +    EK +VNG N  +VY YLK     + 
Sbjct: 446663 FPCNQFGGQEPGSPEEILAFVAKYDKEMAKKLVFFEKADVNGANTREVYSYLKKTCPNED 446842

Query: 113    GPPTINWNFG 122
              G   I WNFG
Sbjct: 446843 GTTDIRWNFG 446872


>gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun
              sequence
          Length = 1098047

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +1

Query: 47     LWSVMSDKAVEILAFP---CNQFGAQEPEEADKIKDFASSKGV-RFRIMEKINVNGPNAH 102
              +W+       E+LA     C ++G    E A      A++ GV   R++ K++V+ P A+
Sbjct: 960988 IWASHRVDIPELLAIRKLFCAKYGKAFEEAA-----LANTNGVLNERVVTKLSVDPPAAY 961152

Query: 103    QVYKYLKAQAGPPTINW 119
               V++YL+       +NW
Sbjct: 961153 LVHRYLERICEQYEVNW 961203


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.318    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,070,880
Number of Sequences: 31
Number of extensions: 53190
Number of successful extensions: 245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 19
length of query: 157
length of database: 7,911,228
effective HSP length: 90
effective length of query: 67
effective length of database: 7,908,438
effective search space: 529865346
effective search space used: 529865346
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)