TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus musculus # Complete (557 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376600.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 36 0.091 gb|GL376599.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 35 0.26 gb|GL376602.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 34 0.34 gb|GL376596.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 0.59 gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 1.0 gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 1.0 gb|GL376601.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 1.0 gb|GL376566.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 1.0 gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 1.3 gb|GL376627.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 1.3 gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 1.3 gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 1.7 gb|GL376607.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 1.7 gb|GL376562.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 1.7 gb|GL376613.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 2.2 gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 2.2 gb|GL376623.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 2.9 gb|GL376633.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 3.8 gb|GL376632.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 3.8 gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 3.8 gb|GL376608.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 3.8 gb|GL376605.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 3.8 gb|GL376637.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.0 gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.0 gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.0 gb|GL376597.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.0 gb|GL376593.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.0 gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.0 gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.0 gb|GL376604.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 6.5 gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 6.5 gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 8.5 gb|GL376619.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 8.5 gb|GL376615.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 8.5 gb|GL376606.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 8.5 gb|GL376592.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 8.5 gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 8.5 >gb|GL376600.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581988, whole genome shotgun sequence Length = 166826 Score = 36.2 bits (82), Expect = 0.091 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = +1 Query: 11 PHSPDPGAQPAPPRRRAR-----ALALLGALLAAAAAVAAARACALLADAQAAARQESA 64 PHS P A + R RA AL LGA LAA+A+ AA AC L D +A A Sbjct: 156271 PHSLHPRAMLSTRRTRASVVAALALLCLGATLAASASCPAAPACTLSTDCGSACNATQA 156447 >gb|GL376599.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581987, whole genome shotgun sequence Length = 709757 Score = 34.7 bits (78), Expect = 0.26 Identities = 41/166 (24%), Positives = 61/166 (36%), Gaps = 18/166 (10%) Frame = +3 Query: 19 QPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESA-------------- 64 QP P R LLAAAA +R A L ++ ES+ Sbjct: 693930 QPTNPGASTRTSRQRKTLLAAAAEHEKSRTVAQLRPSKVLTVTESSTVNELSRLMGRGQA 694109 Query: 65 --LKVLGTDGLFLFSSLDTDQDMYISPEEFKPIAEKLTGSVPVANYEEEELPHDPSEETL 122 + V+ DGL DTD + E KP+ L G V N + DP+ + L Sbjct: 694110 DCVLVISDDGLLTGIITDTDLTRRVVSEN-KPVETTLVGDVMTRNPTFVSM-EDPAIDAL 694283 Query: 123 T--IEARFQPLLMETMTKSKDGFLGVSRLALSGLRNWTTAASPSAA 166 +E +F+ L + + S G L + + +R + S A Sbjct: 694284 ARMLEGKFRHLPVVDKSGSVVGILNIGKCLYDAIRKMEKSEQSSTA 694421 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = -3 Query: 4 ARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQES 63 AR P +P QP PRR+ RA L +LLA + +++A R+C L + +S Sbjct: 549240 ARSWTLPPSQSEPRLQP--PRRQPRARPALRSLLARSCSLSALRSCRSLESSLYVRLPKS 549067 Query: 64 AL 65 A+ Sbjct: 549066 AV 549061 >gb|GL376602.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582005, whole genome shotgun sequence Length = 580922 Score = 34.3 bits (77), Expect = 0.34 Identities = 26/69 (37%), Positives = 32/69 (46%) Frame = +1 Query: 4 ARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQES 63 ARP RRP A P AR A L A AAA A A +R+ A A++ AR+ Sbjct: 420325 ARP--RRPRRRTASAAPVQAALVARLEARLAARSAAAKAPATSRSSRSAASARSTARRPR 420498 Query: 64 ALKVLGTDG 72 + K DG Sbjct: 420499 SRKRTSVDG 420525 Score = 33.1 bits (74), Expect = 0.77 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Frame = -3 Query: 6 PAARRP-HSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESA 64 P R P P P APPRR + A + A AA AAA A A + AR E Sbjct: 5070 PRTRSPARGPPPWPGAAPPRRAHASSAAVAARPRPAAPAAAAPPRARAAPPSSWARGEEL 4891 Query: 65 LKVLGTDGL 73 L ++ +GL Sbjct: 4890 LGIMR*EGL 4864 >gb|GL376596.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581981, whole genome shotgun sequence Length = 580909 Score = 33.5 bits (75), Expect = 0.59 Identities = 49/213 (23%), Positives = 77/213 (36%), Gaps = 7/213 (3%) Frame = -3 Query: 23 PRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSLDTD 82 P RA A+ + + A + L AQ++ Q ++ + L+ S LD Sbjct: 107069 PNSRAMYNAVAASANVELYVLKETDARSFLGSAQSSLFQR-VCEICRHERLYRQSRLDAA 106893 Query: 83 QDMYISPEEFKPIAEKLTGSVPVANYEEE-ELPHDP----SEETL-TIEARFQPLLMETM 136 + + E K AE L A E++ +L HD +E L A PLL T Sbjct: 106892 RHTFHEHEALKKDAELLQSQDHFAEDEQQKQLVHDALAAKAEAALRATNAGASPLLCATA 106713 Query: 137 TKSKDGFLGVSRLALSGLRNWTTAASPSAAFAARHFRPFLPPPGQELGQPWWIIPGELSV 196 L S+L G SP++ P +I ++ Sbjct: 106712 AAPYLPHLRASKLLDFGRNQTYVPISPASRVDLETMVAISSPKMLSTCAKNFIFENSDTL 106533 Query: 197 FTGYLSNNRF-YPPPPKGKEVIIHRLLSMFHPR 228 +GY R +PPPP ++ RL S+ P+ Sbjct: 106532 VSGYPDRLRLHFPPPPATSRSVVERLTSLMAPQ 106434 >gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582037, whole genome shotgun sequence Length = 1414051 Score = 32.7 bits (73), Expect = 1.0 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = -2 Query: 7 AARRPHSPDPGAQPAPPRRRAR-ALALLGALLAAAAAVAAARACALLADAQAAAR 60 AAR SP GA A PR RA A A + + +A AA AAA A A L+ A R Sbjct: 806853 AARTAASPALGAVAAAPRARATVACATVPSRVAETAAAAAAAAAAALSVVTAQHR 806689 Score = 30.4 bits (67), Expect = 5.0 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 4/91 (4%) Frame = -1 Query: 6 PAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQES-A 64 P+AR + D G+ P P LLAA A A L A A AAAR+ S Sbjct: 1263847 PSAREGAAADTGSAPPP-------------LLAAMGTAPAVAAVTLAAAAAAAARRRSER 1263707 Query: 65 LKVLGT---DGLFLFSSLDTDQDMYISPEEF 92 L+++ T D S+ TD PE + Sbjct: 1263706 LRIVETCAWDNRMRNGSVKTDSYWMGKPESW 1263614 Score = 29.6 bits (65), Expect = 8.5 Identities = 19/40 (47%), Positives = 21/40 (52%) Frame = +3 Query: 10 RPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARAC 49 RP + PG+ AP R RARA A GAL A A A C Sbjct: 1119432 RPTASAPGSAAAPARVRARAAA--GALQCACARPARPMFC 1119545 >gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582032, whole genome shotgun sequence Length = 863081 Score = 32.7 bits (73), Expect = 1.0 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 4 ARPAAR--RPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAAR 60 ARPAAR R P P PA PR RARA A AV ++RA ++ + R Sbjct: 587711 ARPAARARRRRPPAPLRTPAAPRARARARARSRGTCVKWTAVRSSRASTRARSSRCSPR 587887 >gb|GL376601.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581991, whole genome shotgun sequence Length = 484626 Score = 32.7 bits (73), Expect = 1.0 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 9/123 (7%) Frame = +1 Query: 6 PAARRPHSPDPGAQPAPPRRRA---------RALALLGALLAAAAAVAAARACALLADAQ 56 P+ P P P A PAPP A + A+LGA ++ A AA +A +A + Sbjct: 259204 PSFAPPPPPAPPAPPAPPAPSAGFNPVMPVPKKAAVLGAAAPSSPAAAAKKAPTPVASPK 259383 Query: 57 AAARQESALKVLGTDGLFLFSSLDTDQDMYISPEEFKPIAEKLTGSVPVANYEEEELPHD 116 AA ++ K + L + + E A+ + EEE L D Sbjct: 259384 KAATPVASPKAEAAEALL---------EEKVEKLELNDTADNAEEAEDEFAAEEEVLDED 259536 Query: 117 PSE 119 P E Sbjct: 259537 PRE 259545 Score = 32.0 bits (71), Expect = 1.7 Identities = 31/113 (27%), Positives = 43/113 (38%) Frame = -2 Query: 1 MGQARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAAR 60 +G AA R P+PG A A + A LA+ + AAA A A Sbjct: 160700 IGLGGVAAIRGSLPNPGDATAFDAASVDQFAAMSATLASTSPTAAAIAAAAAISNSVREL 160521 Query: 61 QESALKVLGTDGLFLFSSLDTDQDMYISPEEFKPIAEKLTGSVPVANYEEEEL 113 QE TD +F+ +T +SPE+ + NYE+E L Sbjct: 160520 QEICKMYHPTD---IFTMSETGLYYALSPEKPASGGRGARQAATAKNYEKERL 160371 >gb|GL376566.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581352, whole genome shotgun sequence Length = 165876 Score = 32.7 bits (73), Expect = 1.0 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Frame = +2 Query: 5 RPAARRPHSPD--------PGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQ 56 R +R H PD PG +P R R R L L ALL AAA A + A AD Sbjct: 124373 REPEQRLHDPDAHQRWRAGPGVEPHVQRARGRQLGQLCALLGGAAARHAVQRRAQGADLA 124552 Query: 57 AAAR 60 AR Sbjct: 124553 RRAR 124564 >gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582039, whole genome shotgun sequence Length = 1829366 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +3 Query: 4 ARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAA 42 AR RP +P G QP+ +R+AR+ L LLA AA Sbjct: 27798 ARMRRARPSTPSAGTQPSRRQRQARSARALAQLLAEKAA 27914 Score = 29.6 bits (65), Expect = 8.5 Identities = 21/56 (37%), Positives = 25/56 (44%) Frame = -3 Query: 4 ARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAA 59 AR R P A+ RR A+A ALL AAA AA CA + + AA Sbjct: 1442268 ARHTTMRASCAKPSARTRASRR*AQANALLPLAAAAAVTSAARPPCARRSTCRCAA 1442101 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = -2 Query: 16 PGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESA 64 P +P PRRRAR+ A AA A R +A A A+ +A Sbjct: 1385152 PTPRPLAPRRRARSTGRSSRSAARTAAAAPPRRTTTVASAMASVANAAA 1385006 >gb|GL376627.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582030, whole genome shotgun sequence Length = 300584 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = +2 Query: 6 PAARRPHSPDPGAQPA--PPRRRARALALLGALLAAAAAVAAARACA 50 PA R P PGA+P PPRR A AAAAA ++R CA Sbjct: 130853 PAGRGPTPGCPGARPRLRPPRRPGSGTGRASA--AAAAAATSSRTCA 130987 >gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582027, whole genome shotgun sequence Length = 666937 Score = 32.3 bits (72), Expect = 1.3 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = -1 Query: 2 GQARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAA----AVAAARACALLADAQA 57 GQ+RPA R P S +P + R + L L AL++ +A VA+ R CA L A Sbjct: 430069 GQSRPANRTPASANPTSTAWRMRVQRLFLRALLALISVSALRPAGVASPRTCAWLLPRGA 429890 Query: 58 AAR 60 A R Sbjct: 429889 ALR 429881 >gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582013, whole genome shotgun sequence Length = 390037 Score = 32.0 bits (71), Expect = 1.7 Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Frame = +3 Query: 2 GQARPAARRPHS-----PDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQ 56 G+ A PH PD AQ P+ RAR A AARACA LA AQ Sbjct: 230205 GRPESATHHPHGRGREGPDGAAQVPAPQGRAR-------------AAIAARACAALAAAQ 230345 Query: 57 A 57 A Sbjct: 230346 A 230348 >gb|GL376607.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582010, whole genome shotgun sequence Length = 314107 Score = 32.0 bits (71), Expect = 1.7 Identities = 21/47 (44%), Positives = 24/47 (51%) Frame = +3 Query: 6 PAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALL 52 P R + D A P R R RA A L L+AAAA AA + ALL Sbjct: 51132 PRPWRRAASDDAAAPTRQRTRPRACAALHQTLSAAAAAAAGDSHALL 51272 >gb|GL376562.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581297, whole genome shotgun sequence Length = 515008 Score = 32.0 bits (71), Expect = 1.7 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 12/68 (17%) Frame = +2 Query: 5 RPAAR-RPHSPDPGAQ-----------PAPPRRRARALALLGALLAAAAAVAAARACALL 52 RP+AR +P +P GA+ PAP R A AAAAA+A ++ CA Sbjct: 439436 RPSARAQPLAPAAGARARRGSSRRARGPAPRASSTRPRAPTFRSRAAAAALARSQRCAAS 439615 Query: 53 ADAQAAAR 60 A QA AR Sbjct: 439616 ASPQAPAR 439639 >gb|GL376613.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582016, whole genome shotgun sequence Length = 784520 Score = 31.6 bits (70), Expect = 2.2 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +1 Query: 1 MGQARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAA-ARACALLADAQAAA 59 MG A R P P A PRR A G + A VAA ARA A + A+A Sbjct: 103153 MGPAAVPVSRASGPRPSCATARPRRLPAGAASGGRAPRSDACVAADARAAAACSSARAPR 103332 Query: 60 RQES 63 R+ S Sbjct: 103333 RRRS 103344 >gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581354, whole genome shotgun sequence Length = 1199448 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +3 Query: 4 ARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARAC 49 ARP RR +P P P RRR R+ AA A+ ++ +C Sbjct: 587961 ARPIPRRRRAPSPRRSCGPTRRRGRST*CSATAAAATASSTSSTSC 588098 Score = 30.0 bits (66), Expect = 6.5 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 8/57 (14%) Frame = -3 Query: 24 RRRARALALLGAL---LAAAAAVAAARACALLADAQAAARQESALKV-----LGTDG 72 RR + LL AL LAA+AA+AAA CA A AA +Q + + LG DG Sbjct: 884830 RRLLKRTPLLRALMQQLAASAAIAAASPCAFRLAAAAAVQQLARRNLRRQLQLGRDG 884660 >gb|GL376623.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582026, whole genome shotgun sequence Length = 637279 Score = 31.2 bits (69), Expect = 2.9 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 9/152 (5%) Frame = -1 Query: 17 GAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGT------ 70 GA PA P R R L+ A+L A+ A LA A+ A + +L Sbjct: 190948 GASPAQPGRIKR---LVRAMLGYASVSILANK*PNLARARKIASRAVKRSILSIR*THSR 190778 Query: 71 -DGLFLFSSLDTDQDMYISPEEFKPIAEKLTGSVPVANYEEEEL--PHDPSEETLTIEAR 127 + L L + +D I P ++P + T S+ N ++ PH TL +E Sbjct: 190777 REALPLCACERSDD---IGPRHWRPCSS--TKSILERNAHRRQI*APHSQIRSTLALEQT 190613 Query: 128 FQPLLMETMTKSKDGFLGVSRLALSGLRNWTT 159 L++ + ++S +LG R G +W T Sbjct: 190612 QLILILLSSSRSIRAYLGC*RCRGRGTTSWET 190517 Score = 30.8 bits (68), Expect = 3.8 Identities = 23/73 (31%), Positives = 28/73 (38%) Frame = +3 Query: 1 MGQARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAAR 60 +G P P P PG P PP+ G AA V A A AL A+ R Sbjct: 188073 LGYPGPPPGAPLGPPPGEPPRPPKEPPPPATGQGLTAAAVQVVKDAEAAAL---AKLLKR 188243 Query: 61 QESALKVLGTDGL 73 +K+L GL Sbjct: 188244 GRFNIKLLEARGL 188282 >gb|GL376633.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582036, whole genome shotgun sequence Length = 1090657 Score = 30.8 bits (68), Expect = 3.8 Identities = 15/25 (60%), Positives = 16/25 (64%) Frame = -1 Query: 6 PAARRPHSPDPGAQPAPPRRRARAL 30 P R PH PDP +PA PR R RAL Sbjct: 1041205 PTTRYPHRPDPSPRPACPRLR-RAL 1041134 >gb|GL376632.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582035, whole genome shotgun sequence Length = 696189 Score = 30.8 bits (68), Expect = 3.8 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = +3 Query: 21 APPR--RRARALALLGALLAAAAAVAAARACALLAD 54 APP R A +A LGA AAA+ AAA C+ L D Sbjct: 256248 APPADTRAAATIAALGARARAAASTAAASCCSALKD 256355 Score = 29.6 bits (65), Expect = 8.5 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 8/63 (12%) Frame = +1 Query: 10 RPHSPDPGAQPAPPRR-RARALALLGALLAAAAAVAAAR-------ACALLADAQAAARQ 61 RP S G++P P R RAR A A AAA AA R A A D +AAAR Sbjct: 309112 RP*SDRAGSRPGTPARTRARWRGARPAAAARAAAAAAMRYDGRTASAGASRGDLRAAARA 309291 Query: 62 ESA 64 SA Sbjct: 309292 GSA 309300 Score = 29.6 bits (65), Expect = 8.5 Identities = 25/70 (35%), Positives = 30/70 (42%) Frame = -1 Query: 3 QARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQE 62 Q AAR+ +P Q A RRR A AL A A A AA RA AA+++ Sbjct: 144900 QPATAARQEAAPRAQFQTAAARRRHAARALRVAERAKAGTAAARRAHRRPQAGVGAAQRD 144721 Query: 63 SALKVLGTDG 72 A G G Sbjct: 144720 DAHAAAGWHG 144691 >gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020, whole genome shotgun sequence Length = 790859 Score = 30.8 bits (68), Expect = 3.8 Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Frame = +1 Query: 2 GQARPAARRPHSPDPGAQPAPPRR-----RARALALLGALLAAAAAVAAARACALLADAQ 56 G RP AR PH G + RR R A + AAAAAV A+ A +A A Sbjct: 566299 GLRRPPARHPHGRAHGDEEPDGRRGGGGRRCGDGARQDRVHAAAAAVPASATAAPVAPAP 566478 Query: 57 AAARQESALKVLGTDG 72 AA + G DG Sbjct: 566479 AATAAVDESQRSGGDG 566526 >gb|GL376608.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582011, whole genome shotgun sequence Length = 418791 Score = 30.8 bits (68), Expect = 3.8 Identities = 21/47 (44%), Positives = 24/47 (51%) Frame = -3 Query: 4 ARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACA 50 ARPA R P+ GAQP P R+ R A+L L AA R CA Sbjct: 85678 ARPAKRVGGVPE-GAQPVP*RQERRIPAVLLCLKRVAARDLVKRQCA 85541 Score = 30.0 bits (66), Expect = 6.5 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = +3 Query: 25 RRARALALLGALLAAAAAVAAARACALLADAQAAARQESAL 65 RRAR L L GA A A+A ACA LA A A + + + Sbjct: 95280 RRARVLLLGGAFAPAGCALAVVLACARLALALLAVARAATV 95402 >gb|GL376605.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582008, whole genome shotgun sequence Length = 1405322 Score = 30.8 bits (68), Expect = 3.8 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Frame = +2 Query: 18 AQPAPPRR--RARALALLGALLAAAAAVAAARACALLADAQAAARQES 63 ++PAP RAR+ + GA+ AAAAA A R CA L + A S Sbjct: 539753 SRPAPEAAATRARSTVIRGAVPAAAAASVARRRCARLRRTRMTAMTAS 539896 >gb|GL376637.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582040, whole genome shotgun sequence Length = 493084 Score = 30.4 bits (67), Expect = 5.0 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +2 Query: 154 LRNWTTAASPSAAFAARHFRPFLPPPGQELGQPWWIIPGEL 194 L N T AA P + + P P PG G P IPG++ Sbjct: 350438 LANQTMAARPISTLTCKMIDPDPPDPGLPRGPPLMFIPGQM 350560 Score = 29.6 bits (65), Expect = 8.5 Identities = 22/60 (36%), Positives = 25/60 (41%) Frame = -2 Query: 4 ARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQES 63 AR RP P A P R ARA+ AA+ A AC ADA AAR + Sbjct: 118077 ARSTPWRPSRPCSSASPRRCRGAARAIPA-PTTTTTAASTAVTAACRPRADAAYAARHSA 117901 >gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582034, whole genome shotgun sequence Length = 1169325 Score = 30.4 bits (67), Expect = 5.0 Identities = 22/63 (34%), Positives = 28/63 (44%) Frame = +1 Query: 3 QARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQE 62 +A PA RP P P AQ +A+A A A + A R A QAA+R Sbjct: 1013278 RAAPACTRPPQPAPQAQCRRSAAARKAVACAHARTRAVDSRAPTRTRAQTERTQAASRDL 1013457 Query: 63 SAL 65 SA+ Sbjct: 1013458 SAV 1013466 Score = 30.4 bits (67), Expect = 5.0 Identities = 25/52 (48%), Positives = 25/52 (48%) Frame = -1 Query: 8 ARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAA 59 ARR H D GA RRRA A A AAAAA AAA A A A A Sbjct: 86673 ARRAHGDD-GADDNAARRRAAAAARGRGPAAAAAAGAAAGALDAAAAPDAVA 86521 Score = 29.6 bits (65), Expect = 8.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 2 GQARPAARRPHSPDPGAQPAPPRRRAR 28 G+ R A P + DP AQP P RR R Sbjct: 1125079 GRGRRRASMPRASDPAAQPVPRARRRR 1124999 >gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582028, whole genome shotgun sequence Length = 960197 Score = 30.4 bits (67), Expect = 5.0 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 7/55 (12%) Frame = +1 Query: 6 PAARR-PHSPDPG------AQPAPPRRRARALALLGALLAAAAAVAAARACALLA 53 P ARR PH P A PPR R + LA G +AA A ARA A LA Sbjct: 696196 PVARRVPHEPRQRRAVV*RAARVPPRARPQVLAHGGFAIAAPRGAADARAGAQLA 696360 >gb|GL376597.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581984, whole genome shotgun sequence Length = 290057 Score = 30.4 bits (67), Expect = 5.0 Identities = 27/114 (23%), Positives = 47/114 (41%) Frame = +2 Query: 27 ARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSLDTDQDMY 86 AR + LLA AR CALL +A R ++L ++S + + Sbjct: 344 ARFVPARSVLLACVLVCLCARNCALLPFPTSARRARASLAP-------VWSVVTGSAAAW 502 Query: 87 ISPEEFKPIAEKLTGSVPVANYEEEELPHDPSEETLTIEARFQPLLMETMTKSK 140 E+ +P A L NY+ ELP+D + + +R+ L +++ + Sbjct: 503 SPREQSRPRAHALLWD---PNYQATELPNDTKKVQFDVASRYIKHLWRVVSRGE 655 Score = 30.4 bits (67), Expect = 5.0 Identities = 27/114 (23%), Positives = 47/114 (41%) Frame = +1 Query: 27 ARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSLDTDQDMY 86 AR + LLA AR CALL +A R ++L ++S + + Sbjct: 1054 ARFVPARSVLLACVLVCLCARNCALLPFPTSARRARASLAP-------VWSVVTGSAAAW 1212 Query: 87 ISPEEFKPIAEKLTGSVPVANYEEEELPHDPSEETLTIEARFQPLLMETMTKSK 140 E+ +P A L NY+ ELP+D + + +R+ L +++ + Sbjct: 1213 SPREQSRPRAHALLWD---PNYQATELPNDTKKVQFDVASRYIKHLWRVVSRGE 1365 >gb|GL376593.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581924, whole genome shotgun sequence Length = 295306 Score = 30.4 bits (67), Expect = 5.0 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = -3 Query: 21 APPRRRARALA--LLGALLAAAAAVAAARACALLADAQAAARQESALKV 67 A PRRR R A ++ A AA+ AAAR C A + A A ++S L++ Sbjct: 112418 ASPRRRPRRRAPRVVRARTGRAASAAAARPCPAEAASSAMALKKSTLRL 112272 >gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581402, whole genome shotgun sequence Length = 979788 Score = 30.4 bits (67), Expect = 5.0 Identities = 18/34 (52%), Positives = 19/34 (55%) Frame = -2 Query: 25 RRARALALLGALLAAAAAVAAARACALLADAQAA 58 RR RA A AAAAA AAA A A L A A+ Sbjct: 500330 RRTRATRATAAAAAAAAAAAAAAAAARLTSASAS 500229 >gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313, whole genome shotgun sequence Length = 1115623 Score = 30.4 bits (67), Expect = 5.0 Identities = 23/63 (36%), Positives = 27/63 (42%) Frame = +1 Query: 4 ARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQES 63 ARP H P A+ +P R A AL +AA AA R CA A A R S Sbjct: 1083796 ARPWPWSQHCPAAAARRSPSRTS*AACALSPGTCGSAAGCAAPRRCA--AAPSTAYRSSS 1083969 Query: 64 ALK 66 A + Sbjct: 1083970 AAR 1083978 >gb|GL376604.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582007, whole genome shotgun sequence Length = 931704 Score = 30.0 bits (66), Expect = 6.5 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = -3 Query: 6 PAARR---PHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQE 62 P RR PH P P P PPRR + + ++ A A+ A A + A R+E Sbjct: 272794 PPPRRQPPPHPPPPRRLPPPPRRPSASTSVSKATPPTASLAQFAAVAARNQQGRTARRRE 272615 Query: 63 S 63 + Sbjct: 272614 T 272612 >gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581789, whole genome shotgun sequence Length = 837833 Score = 30.0 bits (66), Expect = 6.5 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 139 SKDGFLGVSRLALSGLRNWTT 159 SKDGF+ VS L + GLR+W T Sbjct: 682971 SKDGFVSVSFLKMVGLRSWGT 683033 Score = 29.6 bits (65), Expect = 8.5 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = +2 Query: 11 PHSPDPGAQPAPPRRRARALALL-----GALLAAAAAVAAARACALLADAQAAARQES 63 P P A P RR RALALL L A A AA A A A+A +RQ++ Sbjct: 586766 PALAHPSAPNGPTRRERRALALLL*GDPAVLGAPREARAADAKTAAAATARAPSRQQA 586939 >gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582041, whole genome shotgun sequence Length = 1261388 Score = 29.6 bits (65), Expect = 8.5 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Frame = +2 Query: 19 QPAPPRRRARALALLGALLAAAAAVAAARACA---LLADAQAAARQESALKVLGT 70 Q PPR A A+A + A+ AA+AAVAAA A A L A+ +R+ L+ G+ Sbjct: 1028195 QRRPPRHPA-AVAAVSAVAAASAAVAAASAAASARLWPRARRTSRRPWTLRPSGS 1028356 >gb|GL376619.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582022, whole genome shotgun sequence Length = 784545 Score = 29.6 bits (65), Expect = 8.5 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 16 PGAQPAPPRRRARALALLGALLAAAAAVAAARAC 49 PG+ P PRR + A G A +A +A RAC Sbjct: 317138 PGSAPCTPRRGSSTTAGCGGCSAGSARASAPRAC 317239 Score = 29.6 bits (65), Expect = 8.5 Identities = 20/53 (37%), Positives = 23/53 (43%) Frame = -2 Query: 9 RRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQ 61 R SP P +P RRR R A L A AA +AA A A AR+ Sbjct: 367280 RTTPSPGPFYRPCRRRRRRRP*AALVARAAACTTASAATASMTCCSATVVARR 367122 >gb|GL376615.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582018, whole genome shotgun sequence Length = 689162 Score = 29.6 bits (65), Expect = 8.5 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Frame = -3 Query: 6 PAARRPHSPDPGAQ----PAPPRRRARALALL------GALLAAAAAVAAARACALLADA 55 PA RR SP+ A P PP R R ALL + ++A V AA + A D Sbjct: 115563 PACRRISSPEVPASASFVPLPPAARQRQAALLLMKLLGQPVCGSSAVVVAAASIAAAVDT 115384 Query: 56 QAAA 59 AA Sbjct: 115383 DTAA 115372 >gb|GL376606.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582009, whole genome shotgun sequence Length = 520913 Score = 29.6 bits (65), Expect = 8.5 Identities = 27/75 (36%), Positives = 29/75 (38%), Gaps = 13/75 (17%) Frame = -2 Query: 9 RRPHSPDPGAQPAPPRRRARALALLGALLAA-------------AAAVAAARACALLADA 55 RR SP G PAP A A GAL A AA +AARAC D+ Sbjct: 209083 RRGQSPRAGGSPAP*GACAGG-ACSGALACATPAGTAPSAAP*AAAPPSAARACCAACDS 208907 Query: 56 QAAARQESALKVLGT 70 A S V GT Sbjct: 208906 PRAPSSSSRTSVPGT 208862 >gb|GL376592.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581880, whole genome shotgun sequence Length = 568974 Score = 29.6 bits (65), Expect = 8.5 Identities = 23/45 (51%), Positives = 24/45 (53%), Gaps = 6/45 (13%) Frame = -3 Query: 21 APPRRRARALALLGALLAAA------AAVAAARACALLADAQAAA 59 A P R A LLG LLAAA AAVAA RA L+A A A Sbjct: 148291 ARPGRAAAMQVLLGGLLAAAVSFRLRAAVAARRAMELVAFVIAVA 148157 >gb|GL376560.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581242, whole genome shotgun sequence Length = 870537 Score = 29.6 bits (65), Expect = 8.5 Identities = 19/59 (32%), Positives = 26/59 (44%) Frame = -2 Query: 6 PAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESA 64 P + R SP P PAP RRR A + +A + RA A+++AR A Sbjct: 850910 PTSTRAPSPCPSRLPAPLRRRRLACSTARTRPTRSARAGSTRARVTRRVARSSARSRPA 850734 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,239,726 Number of Sequences: 82 Number of extensions: 567044 Number of successful extensions: 5403 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 38 Number of HSP's that attempted gapping in prelim test: 4021 Number of HSP's gapped (non-prelim): 3305 length of query: 557 length of database: 14,267,206 effective HSP length: 107 effective length of query: 450 effective length of database: 14,258,432 effective search space: 6416294400 effective search space used: 6416294400 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 64 (29.3 bits)