TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus musculus # Complete (557 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 33 0.56 gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 31 1.6 gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 31 1.6 gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 31 2.1 gb|CM000626.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 30 4.7 gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 6.2 gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 8.1 gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 8.1 >gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 16, whole genome shotgun sequence Length = 764225 Score = 32.7 bits (73), Expect = 0.56 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 8/45 (17%) Frame = +2 Query: 5 RPAARRPHSPDPGAQP--------APPRRRARALALLGALLAAAA 41 RPA + P S PG+QP AP RR A ALL +L AA+ Sbjct: 317567 RPACQTPRSTTPGSQPVRTIYGHFAPRCRRTAAQALLPRILGAAS 317701 >gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun sequence Length = 976485 Score = 31.2 bits (69), Expect = 1.6 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Frame = -1 Query: 26 RARALALLGALLAAAAAVAAARACALLADAQAAARQESAL---KVLGTDGLFLFSSLDTD 82 +ARA A A A AAA AAA A A + AA E+A+ K + L Sbjct: 930249 QARAAADAAAAAAKAAAEAAAAAAAAIETGDAAKAAEAAIQWQKNAEESTKQIQDELLKS 930070 Query: 83 QDMYISPEEFKPIAEKLTGSVPV 105 Q + + EE I E L GS P+ Sbjct: 930069 QALKRNLEEMGVIVELLDGSEPI 930001 >gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 7, whole genome shotgun sequence Length = 1029019 Score = 31.2 bits (69), Expect = 1.6 Identities = 22/66 (33%), Positives = 29/66 (43%) Frame = -2 Query: 4 ARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQES 63 A PAAR+P S + + AP A+ L L A A L D+ R E+ Sbjct: 452199 AEPAARQPPSTESSSSTAPAAYTAQDLRGLRVAHAVQDFQDNATTVLTLTDSSLLTRDEA 452020 Query: 64 ALKVLG 69 + KVLG Sbjct: 452019 SGKVLG 452002 >gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun sequence Length = 683011 Score = 30.8 bits (68), Expect = 2.1 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = +1 Query: 160 AASPSAAFAARHFRPFLPPPGQELG--QPWWIIPGELSVFTG---YLSNNRFYPPPP 211 ++ P +A+ +PF PP LG QP PG ++ G Y + +YPP P Sbjct: 139663 SSPPYVPYASMPLQPFYPPYNSTLGPPQPPGYFPGNVASAAGNTYYGNTTDYYPPLP 139833 >gb|CM000626.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 24, whole genome shotgun sequence Length = 511739 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = -3 Query: 21 APPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSL 79 APP R++ A A L AAAA AA + + L A + A ++ L + + F++L Sbjct: 355065 APPFRKSSASASLFCAALAAAATAACTSSSALTRAASNASSKAFLAAVAAERKVWFAAL 354889 >gb|CM000614.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 12, whole genome shotgun sequence Length = 901853 Score = 29.3 bits (64), Expect = 6.2 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Frame = -2 Query: 170 RHFRPFLPPPGQELGQPWWIIPGELSVFTGYLSNNRFYPPPPKGKEVIIH--RLLSMFHP 227 +HF ++ P + + +P V L+N PPPP+ K +H RL ++ H Sbjct: 219754 QHFNFYMSAPTESI-----FVPDRRKV-AARLTNGPAPPPPPEDKHRAVHRIRLSALQHN 219593 Query: 228 RPFVKTRFAPQGTVACLTAISDSY 251 FV++ A Q +D Y Sbjct: 219592 FAFVESTAARQRCSVIAVVKADGY 219521 >gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 19, whole genome shotgun sequence Length = 690427 Score = 28.9 bits (63), Expect = 8.1 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = -2 Query: 6 PAARRPHSPDPG-AQPAPPRRRARALALLGALLAAAAAVAAARACAL---LADAQAAARQ 61 P +R + + G A +PP LA + + A A+AVA +R+C+L A + AR Sbjct: 496083 PCPKRACTTNDGVASASPPATTLSRLAWIASDTALASAVARSRSCSLQCFFAAGEYFARN 495904 Query: 62 ESALKVL 68 + + K L Sbjct: 495903 QESSKCL 495883 >gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 9, whole genome shotgun sequence Length = 1002813 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 502 HHINANYFLDITSMKPEDMENNNVFSFSSSFEDPSTAT 539 HH N ++F ++ KP + NNN ED TAT Sbjct: 177654 HHHNHHHFPVYSTFKPNNNNNNNNNQCGEPVEDARTAT 177541 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,066,476 Number of Sequences: 31 Number of extensions: 297105 Number of successful extensions: 1854 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 1704 Number of HSP's gapped (non-prelim): 521 length of query: 557 length of database: 7,911,228 effective HSP length: 103 effective length of query: 454 effective length of database: 7,908,035 effective search space: 3590247890 effective search space used: 3590247890 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (28.5 bits)