TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus
musculus # Complete
         (557 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic s...    34   0.35 
gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   8.5  

>gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig1,
              whole genome shotgun sequence
          Length = 1301413

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = +1

Query: 414    HSILLWGALDDQSCUGSGRTLRETVLESPPILTLLNESFISTWSLVKELEDLQTQQENPL 473
              +S L+W  L   +   S   +    + S P+ + L +S  S WSL +  +  Q Q  NP+
Sbjct: 247459 NSCLVWPVLPTSTLKTSKSWISLPTMHSRPL*SRLVKS--SVWSLKRRSQSFQCQSTNPV 247632

Query: 474    HRQLAGLHLEKYSFPVEMMICLPN 497
                 L  +H   +   + M + +P+
Sbjct: 247633 SLSLHSIHSMVHPISMPMSLSVPS 247704


>gb|GL290990.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold8,
              whole genome shotgun sequence
          Length = 2270872

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 1/147 (0%)
 Frame = -2

Query: 31     ALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSLDTDQDMYISPE 90
              A  GA  AAA++ + A AC   ++ +                + LF   +  +D  +SP 
Sbjct: 685764 AFFGAAAAAASSFSLAAACCCASNMEP---------------MDLFLGFEIGKDESLSPN 685630

Query: 91     EFKPIAEKLTGSVPVANYEEEELPHDPSEETLTIEARFQPLLMETMTKSKDGFLGVSRLA 150
              +   +     G + +A  +  ++P   SE  L   A F      T      GF   + LA
Sbjct: 685629 KPPELFASSRGDLFLAAPKPNDIPSSKSESFLA--AGFSTGFSATTVGFTTGFSATAGLA 685456

Query: 151    LS-GLRNWTTAASPSAAFAARHFRPFL 176
               S G  N ++  S    F+++  +  L
Sbjct: 685455 ASTGTSNISSLLSLVVGFSSKSLKKSL 685375


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,829,863
Number of Sequences: 42
Number of extensions: 284280
Number of successful extensions: 1249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 104
length of query: 557
length of database: 10,980,844
effective HSP length: 106
effective length of query: 451
effective length of database: 10,976,392
effective search space: 4950352792
effective search space used: 4950352792
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)