TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus
musculus # Complete
         (557 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01005293.1| Hyaloperonospora parasitica strain Emoy2 v-7....    33   0.90 
gb|ABWE01000059.1| Hyaloperonospora parasitica strain Emoy2 v-7....    32   2.0  
gb|ABWE01000111.1| Hyaloperonospora parasitica strain Emoy2 v-7....    32   2.6  
gb|ABWE01000770.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   5.8  
gb|ABWE01000442.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   5.8  
gb|ABWE01000723.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   7.6  
gb|ABWE01004758.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   9.9  

>gb|ABWE01005293.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont131.4, whole
           genome shotgun sequence
          Length = 722

 Score = 33.5 bits (75), Expect = 0.90
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 23  PRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESA 64
           P   A++ + +  L+AAA A AA+RA A  ADA A+ +  SA
Sbjct: 441 PPAAAKSESAVSKLVAAAEATAASRAAACAADAAASTKNSSA 566


>gb|ABWE01000059.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont71.2, whole genome
             shotgun sequence
          Length = 96583

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
 Frame = +3

Query: 155   RNWTTAASPSAAF--------AARHFRPFLPPPGQELGQPWWIIPGELS 195
             RNW+ +++PS +         A RH    LP P   +  PWW +   L+
Sbjct: 91110 RNWSRSSAPSTSSCQRSIRVRAVRHCNRRLPMPSSTMSAPWWRVKFRLN 91256


>gb|ABWE01000111.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont19.5, whole genome
             shotgun sequence
          Length = 78824

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = -3

Query: 6     PAARRPHSP----DPGAQPAPPRRRARALALLGALLAAAAAVAAARAC 49
             P ARRPH P     P   P  PR   R     G L +  AA +A   C
Sbjct: 70455 PEARRPHQPRASSSPSLPPPSPRPALRVALRRGPLASCLAAASAVPQC 70312


>gb|ABWE01000770.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont269.2, whole
             genome shotgun sequence
          Length = 28444

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -3

Query: 188   WIIPGELSVFTGYLSNNRFYPPPPKGKEVII-HRLLSMFHPRPFVKTRFAPQGTVACLTA 246
             W +    S+F   LSN +   PP +  E+++ HR L +F P    + R + + +   +T 
Sbjct: 12758 WFLLHLCSLFVSDLSNRKIERPPGRFYEILLYHRDLQIFLPLRPYRLRLSVKTSKCLMTL 12579

Query: 247   ISDSYYTVMFRIHAEFQLSEPPDFPF 272
             I   Y   M  +  EFQ     +F F
Sbjct: 12578 IMTRY---MQHLLNEFQAL*KANFAF 12510


>gb|ABWE01000442.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont85.8, whole
            genome shotgun sequence
          Length = 42311

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
 Frame = -1

Query: 5    RPAARRPHSPDPGAQPAPPRRRARALA-LLGALLAAAAAVAAARACALLADAQAAARQES 63
            +PA     S  P  +P+P  +    L  ++ A L  A +  A+      A         S
Sbjct: 8615 QPARPLSSSSQPQIRPSPVMKLYHPLLFVIAASLGTARSTLASGGMETPASGAQEPESSS 8436

Query: 64   ALKVLGTDGLFLFSSLDTDQDMYISPEEFKPIAEKLTGSVPVANYEEEELPHDPSEETLT 123
            A K L T      S+ D D+D   +  +F  + + L  +   AN  ++  P D  +E   
Sbjct: 8435 ATKFLKTR-----STNDHDEDRKFASTQFNRVIKFLKDNFTPANPRDQLEPRDTPKEAFK 8271

Query: 124  I 124
            I
Sbjct: 8270 I 8268


>gb|ABWE01000723.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont10.11, whole
            genome shotgun sequence
          Length = 30125

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 4    ARPAARRPHSPDPGAQPAPPR 24
            ARP  RR H P P  +P PPR
Sbjct: 1534 ARPPLRRRHLPPPDPEPVPPR 1596


>gb|ABWE01004758.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont21.4, whole
           genome shotgun sequence
          Length = 920

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 146 VSRLALSGLRNWTTAASPSAAFAARHFRPFLPPPGQELGQPWWII 190
           V+  +L G   W +A+       ++H  P+LP P      P W++
Sbjct: 401 VTERSLFGASQWQSASRKQPRRLSKHLLPYLPTPASPSCTPKWLL 267


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,884,189
Number of Sequences: 5422
Number of extensions: 720969
Number of successful extensions: 3875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 3043
Number of HSP's gapped (non-prelim): 1494
length of query: 557
length of database: 22,486,378
effective HSP length: 110
effective length of query: 447
effective length of database: 21,889,958
effective search space: 9784811226
effective search space used: 9784811226
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)